AT5G01880


Description : RING/U-box superfamily protein


Gene families : OG_01_0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0000003 (LandPlants) Phylogenetic Tree(s): OG_02_0000003_tree ,
OG_03_0000216 (SeedPlants) Phylogenetic Tree(s): OG_03_0000216_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G01880
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00161410 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00002p00198340 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AMTR_s00006p00267830 evm_27.TU.AmTr_v1... Nutrient uptake.iron uptake.regulation.IDF1 IRT1-ubiquitin ligase 0.03 Archaeplastida
AMTR_s00019p00162990 evm_27.TU.AmTr_v1... Nutrient uptake.iron uptake.regulation.IDF1 IRT1-ubiquitin ligase 0.04 Archaeplastida
AMTR_s00044p00112360 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AT2G28920 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT3G62690 ATL5 AtL5 0.06 Archaeplastida
AT5G17600 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT5G47610 No alias RING/U-box superfamily protein 0.04 Archaeplastida
GSVIVT01030125001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
GSVIVT01032684001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
LOC_Os01g20930.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os02g08200.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os03g28080.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os07g29600.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os09g37050.1 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os11g39640.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_184439g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_373963g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_51630g0010 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Smo109459 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
Solyc01g088440.2.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc02g082420.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc09g010650.1.1 No alias RING-H2 finger protein ATL33 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc12g094385.1.1 No alias E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e002233_P001 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e002430_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e007129_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e017960_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e018028_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e029032_P001 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Zm00001e031874_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e041385_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
AMTR_s00002p00198340 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 LandPlants
AMTR_s00044p00112360 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 LandPlants
AMTR_s00077p00074350 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 LandPlants
AT3G62690 ATL5 AtL5 0.05 LandPlants
AT5G17600 No alias RING/U-box superfamily protein 0.05 LandPlants
GSVIVT01032684001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 LandPlants
LOC_Os06g45580.1 No alias RING-H2 finger protein ATL73 OS=Arabidopsis thaliana... 0.03 LandPlants
MA_189618g0010 No alias RING-H2-class E3 ligase 0.02 LandPlants
MA_373963g0010 No alias no hits & (original description: none) 0.06 LandPlants
MA_51630g0010 No alias RING-H2-class E3 ligase 0.06 LandPlants
MA_92848g0010 No alias RING-H2-class E3 ligase 0.02 LandPlants
Smo109459 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 LandPlants
Solyc01g081040.4.1 No alias RING-H2-class E3 ligase 0.03 LandPlants
Solyc01g088440.2.1 No alias no hits & (original description: none) 0.06 LandPlants
Solyc02g082420.3.1 No alias RING-H2-class E3 ligase 0.04 LandPlants
Solyc09g010650.1.1 No alias RING-H2 finger protein ATL33 OS=Arabidopsis thaliana... 0.03 LandPlants
Zm00001e002233_P001 No alias no hits & (original description: none) 0.04 LandPlants
Zm00001e002430_P001 No alias no hits & (original description: none) 0.03 LandPlants
Zm00001e007129_P001 No alias RING-H2-class E3 ligase 0.02 LandPlants
Zm00001e017960_P001 No alias no hits & (original description: none) 0.03 LandPlants
Zm00001e018028_P001 No alias RING-H2-class E3 ligase 0.03 LandPlants
Zm00001e041385_P001 No alias RING-H2-class E3 ligase 0.03 LandPlants
AMTR_s00077p00074350 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 SeedPlants
LOC_Os06g45580.1 No alias RING-H2 finger protein ATL73 OS=Arabidopsis thaliana... 0.03 SeedPlants
MA_10208579g0010 No alias no hits & (original description: none) 0.02 SeedPlants
MA_189618g0010 No alias RING-H2-class E3 ligase 0.02 SeedPlants
MA_373963g0010 No alias no hits & (original description: none) 0.06 SeedPlants
MA_51630g0010 No alias RING-H2-class E3 ligase 0.06 SeedPlants
MA_92848g0010 No alias RING-H2-class E3 ligase 0.02 SeedPlants
Solyc09g010650.1.1 No alias RING-H2 finger protein ATL33 OS=Arabidopsis thaliana... 0.03 SeedPlants
Zm00001e002233_P001 No alias no hits & (original description: none) 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding ISS Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001841 Znf_RING 104 147
No external refs found!