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  5. Pir_g02692

Pir_g02692


Description : component *(uS4) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001396 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001396_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g02692

Target Alias Description ECC score Gene Family Method Actions
Aop_g06152 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Dde_g15335 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01008028001 No alias 40S ribosomal protein S9-2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01020020001 No alias 40S ribosomal protein S9-2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Len_g10000 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_10429805g0030 No alias component RPS9 of SSU proteome 0.04 OrthoFinder output from all 47 species
Mp3g00520.1 No alias component RPS9 of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp6g10930.1 No alias component RPS9 of SSU proteome 0.02 OrthoFinder output from all 47 species
Msp_g37588 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ore_g33670 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pir_g48916 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pp3c3_23720V3.1 Pp3c3_23720 Ribosomal protein S4 0.02 OrthoFinder output from all 47 species
Pp3c4_15290V3.1 Pp3c4_15290 Ribosomal protein S4 0.02 OrthoFinder output from all 47 species
Ppi_g27129 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0081.g018027 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0132.g022134 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g09460 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Solyc01g010540.3.1 Solyc01g010540 component RPS9 of SSU proteome 0.03 OrthoFinder output from all 47 species
Solyc01g010580.3.1 Solyc01g010580 component RPS9 of SSU proteome 0.02 OrthoFinder output from all 47 species
Spa_g11414 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Tin_g13815 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e018345_P001 Zm00001e018345 component RPS9 of SSU proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
InterPro domains Description Start Stop
IPR001912 Ribosomal_S4/S9_N 8 108
IPR002942 S4_RNA-bd 109 152
No external refs found!