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  5. AT5G01630

AT5G01630 (BRCA2(V), BRCA2B, ATBRCA2(V))


Aliases : BRCA2(V), BRCA2B, ATBRCA2(V)

Description : BRCA2-like B


Gene families : OG_01_0005452 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005452_tree ,
OG_02_0006174 (LandPlants) Phylogenetic Tree(s): OG_02_0006174_tree ,
OG_03_0005179 (SeedPlants) Phylogenetic Tree(s): OG_03_0005179_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G01630
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00030650 evm_27.TU.AmTr_v1... DNA damage response.BRCC DNA-damage response... 0.06 Archaeplastida
GSVIVT01030280001 No alias DNA damage response.BRCC DNA-damage response... 0.07 Archaeplastida
Gb_10450 No alias DMC1-recombinase recruitment protein (BRCA2) 0.06 Archaeplastida
LOC_Os01g07110.1 No alias DMC1-recombinase recruitment protein (BRCA2). component... 0.05 Archaeplastida
Solyc02g050200.2.1 No alias DMC1-recombinase recruitment protein (BRCA2). component... 0.1 Archaeplastida
Solyc02g050210.2.1 No alias DMC1-recombinase recruitment protein (BRCA2). component... 0.05 Archaeplastida
AMTR_s00023p00030650 evm_27.TU.AmTr_v1... DNA damage response.BRCC DNA-damage response... 0.07 LandPlants
GSVIVT01030280001 No alias DNA damage response.BRCC DNA-damage response... 0.08 LandPlants
Gb_10450 No alias DMC1-recombinase recruitment protein (BRCA2) 0.08 LandPlants
LOC_Os01g07110.1 No alias DMC1-recombinase recruitment protein (BRCA2). component... 0.05 LandPlants
Solyc02g050200.2.1 No alias DMC1-recombinase recruitment protein (BRCA2). component... 0.09 LandPlants
Solyc02g050210.2.1 No alias DMC1-recombinase recruitment protein (BRCA2). component... 0.04 LandPlants
AMTR_s00023p00030650 evm_27.TU.AmTr_v1... DNA damage response.BRCC DNA-damage response... 0.06 SeedPlants
GSVIVT01030280001 No alias DNA damage response.BRCC DNA-damage response... 0.08 SeedPlants
Gb_10450 No alias DMC1-recombinase recruitment protein (BRCA2) 0.07 SeedPlants
LOC_Os01g07110.1 No alias DMC1-recombinase recruitment protein (BRCA2). component... 0.05 SeedPlants
Solyc02g050200.2.1 No alias DMC1-recombinase recruitment protein (BRCA2). component... 0.08 SeedPlants
Solyc02g050210.2.1 No alias DMC1-recombinase recruitment protein (BRCA2). component... 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IBA Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005739 mitochondrion IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002093 BRCA2_repeat 260 290
IPR002093 BRCA2_repeat 166 196
IPR002093 BRCA2_repeat 69 94
IPR015187 BRCA2_OB_1 628 752
IPR015252 BRCA2_hlx 552 624
No external refs found!