Pir_g02445

Description : component *(bL19c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0002345 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002345_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g02445
Cluster	HCCA: Cluster_226

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00210720	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.06	OrthoFinder output from all 47 species
AT4G17560	No alias	Ribosomal protein L19 family protein	0.06	OrthoFinder output from all 47 species
AT5G47190	No alias	Ribosomal protein L19 family protein	0.04	OrthoFinder output from all 47 species
Adi_g002310	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Adi_g008057	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g12532	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Cre17.g734450	No alias	50S ribosomal protein L19, chloroplastic OS=Mesostigma viride	0.04	OrthoFinder output from all 47 species
Dac_g03571	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Dcu_g09086	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Dde_g00499	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ehy_g05444	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Ehy_g06479	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g13874	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01002112001	No alias	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
Gb_05695	No alias	component psRPL19 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
LOC_Os02g43600.1	LOC_Os02g43600	component psRPL19 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Len_g08100	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Lfl_g33279	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
MA_947876g0010	No alias	50S ribosomal protein L19-1, chloroplastic...	0.03	OrthoFinder output from all 47 species
Mp3g02740.1	No alias	component mtRPL19 of large ribosomal subunit proteome....	0.05	OrthoFinder output from all 47 species
Msp_g09265	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Nbi_g00593	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Ore_g04060	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ore_g07193	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012817	No alias	not classified & original description: CDS=1-963	0.03	OrthoFinder output from all 47 species
Sam_g17563	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Solyc08g078010.3.1	Solyc08g078010	component psRPL19 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Zm00001e015296_P001	Zm00001e015296	component psRPL19 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	HCCA
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034311	diol metabolic process	IEP	HCCA
BP	GO:0034312	diol biosynthetic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0071949	FAD binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001857	Ribosomal_L19	123	220

External Links

No external refs found!

Pir_g02445

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation