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  5. Pir_g02380

Pir_g02380


Description : component *(uL11) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001473 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001473_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g02380

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00105p00048810 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
AMTR_s00148p00026900 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
AT2G37190 No alias Ribosomal protein L11 family protein 0.1 OrthoFinder output from all 47 species
AT3G53430 No alias Ribosomal protein L11 family protein 0.05 OrthoFinder output from all 47 species
AT5G60670 No alias Ribosomal protein L11 family protein 0.03 OrthoFinder output from all 47 species
Als_g04839 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g10325 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g06826 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Aop_g70967 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Azfi_s0279.g062260 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ceric.15G067600.1 Ceric.15G067600 component *(uL11) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ceric.23G070600.1 Ceric.23G070600 component *(uL11) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001339.27 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Cre12.g528750 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Dac_g01966 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
GSVIVT01025189001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os02g47140.1 LOC_Os02g47140 component RPL12 of LSU proteome component 0.06 OrthoFinder output from all 47 species
LOC_Os04g50990.1 LOC_Os04g50990 component RPL12 of LSU proteome component 0.09 OrthoFinder output from all 47 species
MA_10427147g0010 No alias component RPL12 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Mp3g02020.1 No alias component RPL12 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Pp3c15_14410V3.1 Pp3c15_14410 Ribosomal protein L11 family protein 0.06 OrthoFinder output from all 47 species
Pp3c6_19290V3.1 Pp3c6_19290 Ribosomal protein L11 family protein 0.02 OrthoFinder output from all 47 species
Ppi_g23184 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Smo227409 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Solyc06g075180.1.1 Solyc06g075180 component RPL12 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Solyc11g065670.1.1 Solyc11g065670 component RPL12 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Solyc11g069440.1.1 Solyc11g069440 component RPL12 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Spa_g04458 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Spa_g04459 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Spa_g06495 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Spa_g22192 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Tin_g23699 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e007067_P001 Zm00001e007067 component RPL12 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e008316_P001 Zm00001e008316 component RPL12 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Zm00001e023297_P001 Zm00001e023297 component RPL12 of LSU proteome component 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR020784 Ribosomal_L11_N 37 91
IPR020783 Ribosomal_L11_C 97 166
No external refs found!