AT5G01400 (ESP4)

Aliases : ESP4

Description : HEAT repeat-containing protein

Gene families : OG_01_0001799 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001799_tree ,
OG_02_0002801 (LandPlants) Phylogenetic Tree(s): OG_02_0002801_tree ,
OG_03_0002268 (SeedPlants) Phylogenetic Tree(s): OG_03_0002268_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G01400
Cluster	HCCA: Cluster_120

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00088050	evm_27.TU.AmTr_v1...	RNA processing.RNA 3-end polyadenylation.Cleavage and...	0.13	Archaeplastida
Cre02.g099200	No alias	RNA processing.RNA 3-end polyadenylation.Cleavage and...	0.02	Archaeplastida
GSVIVT01009243001	No alias	RNA processing.RNA 3-end polyadenylation.Cleavage and...	0.04	Archaeplastida
GSVIVT01009244001	No alias	RNA processing.RNA 3-end polyadenylation.Cleavage and...	0.06	Archaeplastida
GSVIVT01011157001	No alias	RNA processing.RNA 3-end polyadenylation.Cleavage and...	0.1	Archaeplastida
Gb_23976	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.06	Archaeplastida
Gb_24672	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.14	Archaeplastida
LOC_Os01g49940.1	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.13	Archaeplastida
LOC_Os07g49320.1	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.09	Archaeplastida
MA_10426054g0010	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.07	Archaeplastida
MA_10426054g0020	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.1	Archaeplastida
MA_10430259g0010	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.05	Archaeplastida
MA_10432378g0010	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.16	Archaeplastida
MA_8459784g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
Pp3c2_10640V3.1	No alias	HEAT repeat-containing protein	0.08	Archaeplastida
Smo442688	No alias	RNA processing.RNA 3-end polyadenylation.Cleavage and...	0.05	Archaeplastida
Solyc04g076900.2.1	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.09	Archaeplastida
Solyc04g076910.3.1	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.11	Archaeplastida
Solyc09g005330.3.1	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.07	Archaeplastida
Zm00001e020082_P004	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.2	Archaeplastida
Zm00001e035946_P001	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.07	Archaeplastida
AMTR_s00007p00088050	evm_27.TU.AmTr_v1...	RNA processing.RNA 3-end polyadenylation.Cleavage and...	0.1	LandPlants
GSVIVT01009244001	No alias	RNA processing.RNA 3-end polyadenylation.Cleavage and...	0.04	LandPlants
GSVIVT01011157001	No alias	RNA processing.RNA 3-end polyadenylation.Cleavage and...	0.08	LandPlants
Gb_23976	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.05	LandPlants
Gb_24672	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.12	LandPlants
LOC_Os01g49940.1	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.11	LandPlants
LOC_Os07g49320.1	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.09	LandPlants
MA_10426054g0010	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.04	LandPlants
Pp3c2_10640V3.1	No alias	HEAT repeat-containing protein	0.07	LandPlants
Smo442688	No alias	RNA processing.RNA 3-end polyadenylation.Cleavage and...	0.04	LandPlants
Solyc04g076910.3.1	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.12	LandPlants
Solyc09g005330.3.1	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.06	LandPlants
Zm00001e020082_P004	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.19	LandPlants
Zm00001e035946_P001	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.06	LandPlants
AMTR_s00007p00088050	evm_27.TU.AmTr_v1...	RNA processing.RNA 3-end polyadenylation.Cleavage and...	0.1	SeedPlants
GSVIVT01009244001	No alias	RNA processing.RNA 3-end polyadenylation.Cleavage and...	0.04	SeedPlants
GSVIVT01011157001	No alias	RNA processing.RNA 3-end polyadenylation.Cleavage and...	0.08	SeedPlants
Gb_23976	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.05	SeedPlants
Gb_24672	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.12	SeedPlants
LOC_Os01g49940.1	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.11	SeedPlants
LOC_Os07g49320.1	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.08	SeedPlants
MA_10426054g0010	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.05	SeedPlants
MA_10429990g0020	No alias	no hits & (original description: none)	0.01	SeedPlants
MA_34105g0010	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.01	SeedPlants
Solyc04g076910.3.1	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.1	SeedPlants
Solyc09g005330.3.1	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.06	SeedPlants
Zm00001e020082_P004	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.18	SeedPlants
Zm00001e035946_P001	No alias	component Symplekin/Pta1 of Cleavage and Polyadenylation...	0.06	SeedPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	NAS	Interproscan
CC	GO:0005849	mRNA cleavage factor complex	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IMP	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	posttranscriptional regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016441	posttranscriptional gene silencing	None	Extended
BP	GO:0016458	gene silencing	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031047	gene silencing by RNA	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035194	post-transcriptional gene silencing by RNA	IMP	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR032460	Symplekin/Pta1_N	96	289
IPR022075	Symplekin_C	1033	1211

External Links

No external refs found!

AT5G01400 (ESP4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation