1. Home
  2. Species
  3. Pleocnemia irregularis
  4. Sequence
  5. Pir_g02221

Pir_g02221 (At-SCL30A, SCL30A)


Aliases : At-SCL30A, SCL30A

Description : RNA splicing factor *(SCL28/30/33) & original description: none


Gene families : OG0001193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001193_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g02221

Target Alias Description ECC score Gene Family Method Actions
AT3G55460 SCL30, At-SCL30 SC35-like splicing factor 30 0.03 OrthoFinder output from all 47 species
Aob_g08913 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09308 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g38569 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000402.16 At-SCL30A, SCL30A RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Cre01.g038650 At-SCL30A, SCL30A RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder output from all 47 species
Cre13.g586916 At-SCL28, SCL28 RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder output from all 47 species
Ehy_g02200 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01025432001 At-SCL30A, SCL30A Serine/arginine-rich SC35-like splicing factor SCL30A... 0.02 OrthoFinder output from all 47 species
LOC_Os03g24890.1 At-SCL28, SCL28,... SCL28/30/33 RNA splicing factor 0.02 OrthoFinder output from all 47 species
LOC_Os12g38430.1 SCL30, At-SCL30,... SCL28/30/33 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Lfl_g14090 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10639 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g005820.4.1 At-SCL30A,... SCL28/30/33 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Spa_g11978 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29764 At-SCL30A, SCL30A EC_2.7 transferase transferring phosphorus-containing... 0.05 OrthoFinder output from all 47 species
Zm00001e002967_P002 SCL30, At-SCL30,... SCL28/30/33 RNA splicing factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 33 102
No external refs found!