Pir_g01822

Description : component *(uL13) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001291_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g01822
Cluster	HCCA: Cluster_238

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00089p00040540	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
AT3G07110	No alias	Ribosomal protein L13 family protein	0.03	OrthoFinder output from all 47 species
AT3G24830	No alias	Ribosomal protein L13 family protein	0.05	OrthoFinder output from all 47 species
AT5G48760	No alias	Ribosomal protein L13 family protein	0.04	OrthoFinder output from all 47 species
Adi_g108658	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ala_g00711	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g12384	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g06902	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aop_g09537	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s0075.g037721	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s0272.g061284	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0594.g078801	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.05G058300.1	Ceric.05G058300	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.20G024700.1	Ceric.20G024700	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000792.29	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Cre12.g532550	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Dac_g00316	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g06037	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ehy_g02053	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01021080001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
GSVIVT01028661001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
LOC_Os03g54890.1	LOC_Os03g54890	component RPL13a of LSU proteome component	0.05	OrthoFinder output from all 47 species
Len_g10030	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Len_g17905	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Mp2g08690.1	No alias	component RPL13a of LSU proteome component	0.04	OrthoFinder output from all 47 species
Mp4g15790.1	No alias	component RPL13a of LSU proteome component	0.04	OrthoFinder output from all 47 species
Msp_g06781	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Nbi_g04609	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g12434	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ore_g10938	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pnu_g08469	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c11_17280V3.1	Pp3c11_17280	Ribosomal protein L13 family protein	0.03	OrthoFinder output from all 47 species
Pp3c19_10330V3.1	Pp3c19_10330	Ribosomal protein L13 family protein	0.03	OrthoFinder output from all 47 species
Pp3c1_15830V3.1	Pp3c1_15830	Ribosomal protein L13 family protein	0.03	OrthoFinder output from all 47 species
Pp3c2_20550V3.1	Pp3c2_20550	Ribosomal protein L13 family protein	0.02	OrthoFinder output from all 47 species
Sam_g07579	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g14122	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Smo166650	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Solyc05g053670.3.1	Solyc05g053670	component RPL13a of LSU proteome component	0.05	OrthoFinder output from all 47 species
Solyc09g091740.4.1	Solyc09g091740	component RPL13a of LSU proteome component	0.04	OrthoFinder output from all 47 species
Spa_g10532	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g15628	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g22049	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Tin_g00453	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e005719_P002	Zm00001e005719	component RPL13a of LSU proteome component	0.04	OrthoFinder output from all 47 species
Zm00001e012017_P002	Zm00001e012017	component RPL13a of LSU proteome component	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000159	protein phosphatase type 2A complex	IEP	HCCA
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006448	regulation of translational elongation	IEP	HCCA
BP	GO:0006449	regulation of translational termination	IEP	HCCA
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
MF	GO:0019208	phosphatase regulator activity	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
MF	GO:0019888	protein phosphatase regulator activity	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034250	positive regulation of amide metabolic process	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0043022	ribosome binding	IEP	HCCA
BP	GO:0043243	positive regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0045901	positive regulation of translational elongation	IEP	HCCA
BP	GO:0045905	positive regulation of translational termination	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
MF	GO:0051087	chaperone binding	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
BP	GO:0051259	protein complex oligomerization	IEP	HCCA
BP	GO:0051260	protein homooligomerization	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1903293	phosphatase complex	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005822	Ribosomal_L13	11	116

External Links

No external refs found!

Pir_g01822

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation