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Pir_g01377 (SCD1)


Aliases : SCD1

Description : component *(SCD1)of post-Golgi trafficking SCD complex & original description: none


Gene families : OG0004472 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004472_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g01377

Target Alias Description ECC score Gene Family Method Actions
AT1G49040 SCD1 stomatal cytokinesis defective / SCD1 protein (SCD1) 0.05 OrthoFinder output from all 47 species
Ceric.26G003900.1 SCD1, Ceric.26G003900 not classified & original description: pacid=50599429... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001574.10 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre07.g352900 No alias DENN domain and WD repeat-containing protein SCD1... 0.02 OrthoFinder output from all 47 species
Dcu_g06506 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.03 OrthoFinder output from all 47 species
Mp5g20500.1 SCD1 SCD1 component of post-Golgi trafficking SCD complex 0.03 OrthoFinder output from all 47 species
Pnu_g11953 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.03 OrthoFinder output from all 47 species
Smo118822 SCD1 Vesicle trafficking.endomembrane trafficking.post-Golgi... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR001194 cDENN_dom 126 308
IPR001680 WD40_repeat 1187 1212
IPR001680 WD40_repeat 1046 1079
IPR001680 WD40_repeat 960 997
IPR001680 WD40_repeat 866 914
IPR001680 WD40_repeat 921 956
IPR001680 WD40_repeat 1084 1120
IPR005113 uDENN_dom 38 106
No external refs found!