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  5. Pir_g01373

Pir_g01373 (CHB3, ATSWI3D)


Aliases : CHB3, ATSWI3D

Description : SMARCC component *(SWI3) of chromatin remodeling complex & original description: none


Gene families : OG0000817 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000817_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g01373

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene15943.t1 CHB4, SWI3C,... SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Aspi01Gene17691.t1 Aspi01Gene17691 SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Cre08.g364050 CHB3, ATSWI3D Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
LOC_Os02g10060.1 CHB2, SWI3B,... component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
LOC_Os04g40420.1 SWI3A, CHB1,... component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
LOC_Os12g07730.1 CHB4, SWI3C,... component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Len_g07560 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Mp8g15610.1 SWI3A, CHB1, ATSWI3A component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Sam_g10332 No alias SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Sam_g19959 No alias SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Sam_g52721 No alias SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Solyc01g109510.3.1 CHB3, ATSWI3D,... component BAF255/170 of chromatin remodeling complex 0.06 OrthoFinder output from all 47 species
Solyc06g060120.3.1 CHB4, SWI3C,... component BAF255/170 of chromatin remodeling complex 0.04 OrthoFinder output from all 47 species
Spa_g30642 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
InterPro domains Description Start Stop
IPR007526 SWIRM 130 218
IPR032451 SMARCC_C 631 706
IPR000433 Znf_ZZ 292 329
IPR001005 SANT/Myb 351 393
No external refs found!