AT4G39620 (EMB2453, ATPPR5)


Aliases : EMB2453, ATPPR5

Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000306 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000306_tree ,
OG_02_0007143 (LandPlants) Phylogenetic Tree(s): OG_02_0007143_tree ,
OG_03_0009674 (SeedPlants) Phylogenetic Tree(s): OG_03_0009674_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G39620
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00203740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39620,... 0.03 Archaeplastida
Cpa|evm.model.tig00001623.10 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.01 Archaeplastida
Cpa|evm.model.tig00021435.54 No alias No description available 0.02 Archaeplastida
GSVIVT01017677001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.08 Archaeplastida
GSVIVT01022204001 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.05 Archaeplastida
GSVIVT01028689001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.04 Archaeplastida
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.08 Archaeplastida
Gb_00230 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.07 Archaeplastida
Gb_18854 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.04 Archaeplastida
Gb_36199 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.12 Archaeplastida
Gb_37344 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.02 Archaeplastida
Gb_38049 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.03 Archaeplastida
LOC_Os02g51480.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.03 Archaeplastida
LOC_Os03g02430.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 Archaeplastida
LOC_Os03g19650.3 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.03 Archaeplastida
LOC_Os04g39970.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os06g07550.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.04 Archaeplastida
MA_793801g0010 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.03 Archaeplastida
MA_946756g0010 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.02 Archaeplastida
Mp1g15120.1 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.06 Archaeplastida
Pp3c20_15110V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
Pp3c8_13830V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
Pp3c8_4580V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Archaeplastida
Smo119487 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.02 Archaeplastida
Solyc01g006500.4.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.04 Archaeplastida
Solyc01g057200.4.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.11 Archaeplastida
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.16 Archaeplastida
Solyc08g045780.4.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.07 Archaeplastida
Solyc12g098990.2.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.09 Archaeplastida
Zm00001e000106_P001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.02 Archaeplastida
Zm00001e007821_P003 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.1 Archaeplastida
Zm00001e031052_P001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.07 Archaeplastida
Zm00001e032726_P001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.04 Archaeplastida
AMTR_s00007p00203740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39620,... 0.02 LandPlants
GSVIVT01022204001 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.04 LandPlants
Gb_36199 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.1 LandPlants
LOC_Os02g51480.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.03 LandPlants
Pp3c8_4580V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 LandPlants
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.15 LandPlants
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.1 LandPlants
GSVIVT01022204001 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.04 SeedPlants
Gb_36199 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.1 SeedPlants
LOC_Os02g51480.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.03 SeedPlants
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.15 SeedPlants
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.1 SeedPlants

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast ISM Interproscan
BP GO:0009793 embryo development ending in seed dormancy IMP Interproscan
BP GO:0009793 embryo development ending in seed dormancy NAS Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 131 177
IPR002885 Pentatricopeptide_repeat 206 253
IPR002885 Pentatricopeptide_repeat 315 342
IPR002885 Pentatricopeptide_repeat 385 407
IPR002885 Pentatricopeptide_repeat 349 374
IPR002885 Pentatricopeptide_repeat 279 306
No external refs found!