Pir_g01067 (PGP6)

Aliases : PGP6

Description : subfamily ABCB transporter & original description: none

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g01067

Target	Alias	Description	ECC score	Gene Family Method
AT4G18050	PGP9	P-glycoprotein 9	0.03	OrthoFinder output from all 47 species
Adi_g015267	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g019429	PGP20	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g080508	PGP1, ABCB1, ATPGP1	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g02407	PGP20	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g22201	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g08692	PGP20	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Gb_32487	PGP1, ABCB1, ATPGP1	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
LOC_Os01g18670.1	PGP21, LOC_Os01g18670	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
LOC_Os01g74470.1	PGP20, LOC_Os01g74470	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
LOC_Os02g09720.1	LOC_Os02g09720	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
LOC_Os03g17180.1	PGP20, LOC_Os03g17180	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
MA_929827g0010	No alias	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Mp2g02910.1	ABCB19,...	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0809.g027741	PGP20	subfamily ABCB transporter & original description: CDS=203-3700	0.03	OrthoFinder output from all 47 species
Sam_g25355	No alias	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g52431	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Smo139408	PGP20	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Solyc04g010310.4.1	PGP20, Solyc04g010310	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
Spa_g17188	PGP10	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Spa_g21974	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e001258_P003	PGP20, Zm00001e001258	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	HCCA
MF	GO:0000287	magnesium ion binding	IEP	HCCA
CC	GO:0000776	kinetochore	IEP	HCCA
MF	GO:0003879	ATP phosphoribosyltransferase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
BP	GO:0006547	histidine metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	HCCA
MF	GO:0016763	pentosyltransferase activity	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0034508	centromere complex assembly	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
BP	GO:0045927	positive regulation of growth	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
CC	GO:0099080	supramolecular complex	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	1181	1329
IPR003439	ABC_transporter-like_ATP-bd	425	567
IPR011527	ABC1_TM_dom	80	352
IPR011527	ABC1_TM_dom	843	1111

External Links

No external refs found!

Pir_g01067 (PGP6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation