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  5. Pir_g01055

Pir_g01055


Description : SMARCF component *(LFR) of SWI/SNF chromatin remodeling complex & original description: none


Gene families : OG0004724 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004724_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g01055

Target Alias Description ECC score Gene Family Method Actions
AT1G50620 No alias RING/FYVE/PHD zinc finger superfamily protein 0.03 OrthoFinder output from all 47 species
Ala_g13563 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Als_g22107 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ehy_g21785 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.04 OrthoFinder output from all 47 species
MA_10430947g0010 No alias PHD finger protein At3g20280 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp3g09480.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g02423 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Ore_g36191 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Pp3c24_16720V3.1 Pp3c24_16720 RING/FYVE/PHD zinc finger superfamily protein 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0151.g023394 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Solyc12g014540.2.1 Solyc12g014540 PHD finger protein At3g20280 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g09424 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Zm00001e023427_P001 Zm00001e023427 PHD finger protein At3g20280 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 314 361
IPR001025 BAH_dom 621 748
No external refs found!