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  5. Smo235696

Smo235696 (PACid_15407665)


Aliases : PACid_15407665

Description : 27.3.44 RNA.regulation of transcription.Chromatin Remodeling Factors chromatin remodeling 8 (CHR8) FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding INVOLVED IN: DNA repair, response to gamma radiation EXPRESSED IN: 15 plant structures EXPRESSED DURING: 6 growth stages CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330) BEST Arabidopsis thaliana protein match is: chromatin remodeling 24 (TAIR:AT5G63950.1) Has 17230 Blast hits to 14463 proteins in 1653 species: Archae - 99 Bacteria - 4180 Metazoa - 3846 Fungi - 4219 Plants - 1677 Viruses - 118 Other Eukaryotes - 3091 (source: NCBI BLink). & (chl4|523271 : 590.0


Gene families : OG_01_0001665 (Gene family) Phylogenetic Tree(s): OG0001665_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo235696
Cluster HCCA cluster: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
Cre06.g270850 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.01 Gene family
GSVIVT01028359001 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.04 Gene family
Solyc09g066500.3.1 Solyc09g066500.3 27.3.44 RNA.regulation of transcription.Chromatin... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 316 423
No external refs found!