Smo235487 (PACid_15406183)


Aliases : PACid_15406183

Description : 27.3.24 RNA.regulation of transcription.MADS box transcription factor family a MADS box transcription factor expressed in the carpel and ovules SEEDSTICK (STK) FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity INVOLVED IN: regulation of transcription, DNA-dependent, ovule development, carpel development LOCATED IN: nucleus EXPRESSED IN: 11 plant structures EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487) BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT2G42830.2). (original description: no original description)'


Gene families : OG_01_0000006 (Gene family) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo235487
Cluster HCCA cluster: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
LOC_Os09g02780 Os09g0116000 No description available 0.02 Gene family
Zm00001d047355 GRMZM2G161666 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!