Pir_g00320

Description : component *(uS6c) of small plastid ribosomal-subunit proteome & original description: none

Gene families : OG0003772 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003772_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g00320

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00220150	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Adi_g019564	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aev_g04389	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ala_g02976	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Als_g05365	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Als_g09083	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Als_g19098	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Aob_g08781	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Aop_g30964	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Azfi_s0051.g031290	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Cba_g26011	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.10G083400.1	Ceric.10G083400	component *(uS6c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Cre12.g520600	No alias	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Dac_g02644	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Dcu_g40728	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dde_g06910	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01019593001	No alias	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
LOC_Os03g62630.1	LOC_Os03g62630	component psRPS6 of small ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
Len_g38836	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Lfl_g06876	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Mp4g07210.1	No alias	component psRPS6 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Msp_g00928	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Nbi_g25871	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Pnu_g10315	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ppi_g06171	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009778	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Solyc08g082690.2.1	Solyc08g082690	component psRPS6 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Spa_g37875	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Tin_g06363	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0003333	amino acid transmembrane transport	IEP	HCCA
MF	GO:0004177	aminopeptidase activity	IEP	HCCA
MF	GO:0004325	ferrochelatase activity	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0006783	heme biosynthetic process	IEP	HCCA
BP	GO:0006865	amino acid transport	IEP	HCCA
MF	GO:0008235	metalloexopeptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
BP	GO:0015849	organic acid transport	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0042168	heme metabolic process	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA
MF	GO:0070006	metalloaminopeptidase activity	IEP	HCCA
BP	GO:1903825	organic acid transmembrane transport	IEP	HCCA
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000529	Ribosomal_S6	116	213

External Links

No external refs found!

Pir_g00320

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation