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  5. Len_g59793

Len_g59793 (AtAGP20, AGP20)


Aliases : AtAGP20, AGP20

Description : not classified & original description: none


Gene families : OG0003275 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003275_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g59793

Target Alias Description ECC score Gene Family Method Actions
Ala_g34170 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Aspi01Gene62368.t1 AtAGP20, AGP20,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g04799 AtAGP20, AGP20 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.16G056000.1 AtAGP20, AGP20,... not classified & original description: pacid=50590279... 0.03 OrthoFinder output from all 47 species
GSVIVT01015262001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01027049001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_09983 AtAGP20, AGP20 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os01g46850.1 LOC_Os01g46850 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10427438g0010 AGP16, ATAGP16 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_120230g0010 AtAGP20, AGP20 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0069.g016488 AGP16, ATAGP16 not classified & original description: CDS=83-316 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0806.g027738 AGP16, ATAGP16 not classified & original description: CDS=83-316 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s3300.g028712 AGP16, ATAGP16 not classified & original description: CDS=83-316 0.04 OrthoFinder output from all 47 species
Solyc01g095515.1.1 AGP16, ATAGP16,... no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Spa_g03352 AGP41 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g49189 AGP16, ATAGP16 not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
InterPro domains Description Start Stop
IPR009424 AGP16/20/22/41 75 107
No external refs found!