Smo234188 (PACid_15423242)


Aliases : PACid_15423242

Description : 10.7 cell wall.modification putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin B3 (EXPB3) INVOLVED IN: response to cyclopentenone, syncytium formation, plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening LOCATED IN: endomembrane system, extracellular region EXPRESSED IN: 21 plant structures EXPRESSED DURING: 13 growth stages CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117) BEST Arabidopsis thaliana protein match is: expansin B1 (TAIR:AT2G20750.1) Has 2090 Blast hits to 2086 proteins in 147 species: Archae - 0 Bacteria - 32 Metazoa - 0 Fungi - 5 Plants - 2024 Viruses - 0 Other Eukaryotes - 29 (source: NCBI BLink). (original description: no original description)'


Gene families : OG_01_0000141 (Gene family) Phylogenetic Tree(s): OG0000141_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo234188
Cluster HCCA cluster: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AT4G28250 EXPB3, ATEXPB3,... expansin B3 0.02 Gene family
LOC_Os04g46650 Os04g0552200 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.02 Gene family
Zm00001d026169 GRMZM2G100931 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.03 Gene family
Zm00001d029913 GRMZM2G176595 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.02 Gene family
Zm00001d047094 GRMZM2G073260 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.03 Gene family
Zm00001d047135 GRMZM2G072886 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.02 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 68 148
No external refs found!