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Description : component *(RPP3) of large ribosomal-subunit (LSU) proteome & original description: none
Gene families : OG0003859 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003859_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Len_g58897 | |
| Cluster | HCCA: Cluster_174 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00025p00182570 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.05 | OrthoFinder output from all 47 species | |
| AT4G25890 | No alias | 60S acidic ribosomal protein family | 0.04 | OrthoFinder output from all 47 species | |
| AT5G57290 | No alias | 60S acidic ribosomal protein family | 0.06 | OrthoFinder output from all 47 species | |
| Aev_g06306 | No alias | component *(RPP3) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g10658 | No alias | component *(RPP3) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Ala_g35024 | No alias | component *(RPP3) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.24G014300.1 | Ceric.24G014300 | component *(RPP3) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01010910001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os01g13080.1 | LOC_Os01g13080 | component RPP3 of LSU proteome component | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os06g48780.1 | LOC_Os06g48780 | component RPP3 of LSU proteome component | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g28349 | No alias | component *(RPP3) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| MA_10431312g0020 | No alias | component RPP3 of LSU proteome component. component... | 0.04 | OrthoFinder output from all 47 species | |
| Mp3g07010.1 | No alias | component RPP3 of LSU proteome component | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g01622 | No alias | component *(RPP3) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c21_16160V3.1 | Pp3c21_16160 | 60S acidic ribosomal protein family | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g24981 | No alias | component *(RPP3) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc07g009330.4.1 | Solyc07g009330 | component RPP3 of LSU proteome component | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g04803 | No alias | component *(RPP3) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g17718 | No alias | component *(RPP3) of large ribosomal-subunit (LSU)... | 0.08 | OrthoFinder output from all 47 species | |
| Zm00001e013180_P001 | Zm00001e013180 | component RPP3 of LSU proteome component | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006325 | chromatin organization | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| CC | GO:0015934 | large ribosomal subunit | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| CC | GO:0044391 | ribosomal subunit | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |