AT4G37120 (SMP2)


Aliases : SMP2

Description : Pre-mRNA splicing Prp18-interacting factor


Gene families : OG_01_0004562 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004562_tree ,
OG_02_0005673 (LandPlants) Phylogenetic Tree(s): OG_02_0005673_tree ,
OG_03_0006060 (SeedPlants) Phylogenetic Tree(s): OG_03_0006060_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G37120
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01027813001 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica 0.03 Archaeplastida
Mp1g12350.1 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.03 Archaeplastida
Smo164109 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica 0.02 Archaeplastida
Solyc09g072570.3.1 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.07 Archaeplastida
Zm00001e029263_P001 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.04 Archaeplastida
GSVIVT01027813001 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica 0.03 LandPlants
LOC_Os08g03390.1 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.02 LandPlants
Mp1g12350.1 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.03 LandPlants
Smo164109 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica 0.02 LandPlants
Solyc09g072570.3.1 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.05 LandPlants
Zm00001e029263_P001 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.04 LandPlants
AMTR_s00067p00141610 evm_27.TU.AmTr_v1... Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica 0.02 SeedPlants
LOC_Os08g03390.1 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.02 SeedPlants
Solyc09g072570.3.1 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.05 SeedPlants
Zm00001e029263_P001 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003727 single-stranded RNA binding TAS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008284 positive regulation of cell population proliferation IGI Interproscan
BP GO:0008284 positive regulation of cell population proliferation RCA Interproscan
BP GO:0008380 RNA splicing TAS Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Interproscan
BP GO:0051276 chromosome organization RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR021715 Slu7_dom 136 405
No external refs found!