Smo233036 (PACid_15419514)


Aliases : PACid_15419514

Description : 27.3.71 RNA.regulation of transcription.SNF7 Encodes an ESCRT-related protein: CHMP1A/AT1G73030 CHMP1B/AT1G17730. CHMP1A and B mediate multivesicular body sorting of auxin carriers and are required for plant development. ESCRT: Endosomal Sorting Complexes Required For Transport machinery CHMP: Charged Multivesicular Body Protein/Chromatin Modifying Protein. VPS46.2 CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024) BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 46.1 (TAIR:AT1G17730.1) Has 1330 Blast hits to 1329 proteins in 227 species: Archae - 0 Bacteria - 0 Metazoa - 507 Fungi - 292 Plants - 340 Viruses - 0 Other Eukaryotes - 191 (source: NCBI BLink). & (loc_os06g43590.3 : 268.0


Gene families : OG_01_0002574 (Gene family) Phylogenetic Tree(s): OG0002574_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo233036
Cluster HCCA cluster: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
AT1G73030 CHMP1A, VPS46.2 SNF7 family protein 0.02 Gene family

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005024 Snf7_fam 10 176
No external refs found!