AT4G36680

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0004280 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004280_tree ,
OG_02_0002954 (LandPlants) Phylogenetic Tree(s): OG_02_0002954_tree ,
OG_03_0000415 (SeedPlants) Phylogenetic Tree(s): OG_03_0000415_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G36680
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00106010	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g36680,...	0.03	Archaeplastida
GSVIVT01018992001	No alias	Pentatricopeptide repeat-containing protein At4g36680,...	0.03	Archaeplastida
LOC_Os01g58080.1	No alias	PPR-type mitochondrial ribosome regulatory protein (PPR336)	0.05	Archaeplastida
LOC_Os02g42210.1	No alias	Pentatricopeptide repeat-containing protein At4g36680,...	0.05	Archaeplastida
Solyc02g062910.3.1	No alias	Pentatricopeptide repeat-containing protein At4g36680,...	0.08	Archaeplastida
Solyc02g085650.4.1	No alias	Pentatricopeptide repeat-containing protein At4g36680,...	0.05	Archaeplastida
Solyc10g005280.1.1	No alias	PPR-type mitochondrial ribosome regulatory protein (PPR336)	0.13	Archaeplastida
Zm00001e015190_P001	No alias	Pentatricopeptide repeat-containing protein At2g18520,...	0.09	Archaeplastida
Zm00001e019591_P001	No alias	PPR-type mitochondrial ribosome regulatory protein (PPR336)	0.08	Archaeplastida
AMTR_s00029p00105510	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g36680,...	0.03	LandPlants
AMTR_s00029p00106010	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g36680,...	0.03	LandPlants
GSVIVT01018992001	No alias	Pentatricopeptide repeat-containing protein At4g36680,...	0.02	LandPlants
LOC_Os01g58080.1	No alias	PPR-type mitochondrial ribosome regulatory protein (PPR336)	0.04	LandPlants
LOC_Os02g42210.1	No alias	Pentatricopeptide repeat-containing protein At4g36680,...	0.05	LandPlants
Solyc02g062910.3.1	No alias	Pentatricopeptide repeat-containing protein At4g36680,...	0.08	LandPlants
Solyc02g085650.4.1	No alias	Pentatricopeptide repeat-containing protein At4g36680,...	0.05	LandPlants
Solyc10g005280.1.1	No alias	PPR-type mitochondrial ribosome regulatory protein (PPR336)	0.13	LandPlants
Zm00001e015190_P001	No alias	Pentatricopeptide repeat-containing protein At2g18520,...	0.08	LandPlants
Zm00001e019591_P001	No alias	PPR-type mitochondrial ribosome regulatory protein (PPR336)	0.08	LandPlants
AMTR_s00029p00105510	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g36680,...	0.03	SeedPlants
AMTR_s00029p00106010	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g36680,...	0.03	SeedPlants
LOC_Os01g57630.2	No alias	Pentatricopeptide repeat-containing protein At1g55890,...	0.05	SeedPlants
LOC_Os01g58080.1	No alias	PPR-type mitochondrial ribosome regulatory protein (PPR336)	0.03	SeedPlants
LOC_Os02g42210.1	No alias	Pentatricopeptide repeat-containing protein At4g36680,...	0.04	SeedPlants
MA_138370g0010	No alias	Pentatricopeptide repeat-containing protein At1g80150,...	0.01	SeedPlants
Solyc02g062910.3.1	No alias	Pentatricopeptide repeat-containing protein At4g36680,...	0.08	SeedPlants
Solyc02g079830.1.1	No alias	Pentatricopeptide repeat-containing protein At3g13160,...	0.05	SeedPlants
Solyc02g085650.4.1	No alias	Pentatricopeptide repeat-containing protein At4g36680,...	0.05	SeedPlants
Solyc03g031460.1.1	No alias	Pentatricopeptide repeat-containing protein At3g13160,...	0.11	SeedPlants
Solyc05g012250.3.1	No alias	Pentatricopeptide repeat-containing protein At1g80150,...	0.03	SeedPlants
Solyc10g005280.1.1	No alias	PPR-type mitochondrial ribosome regulatory protein (PPR336)	0.12	SeedPlants
Zm00001e003447_P001	No alias	no hits & (original description: none)	0.02	SeedPlants
Zm00001e015190_P001	No alias	Pentatricopeptide repeat-containing protein At2g18520,...	0.07	SeedPlants
Zm00001e019591_P001	No alias	PPR-type mitochondrial ribosome regulatory protein (PPR336)	0.07	SeedPlants
Zm00001e028938_P001	No alias	Pentatricopeptide repeat-containing protein At1g55890,...	0.1	SeedPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006626	protein targeting to mitochondrion	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006820	anion transport	None	Extended
BP	GO:0006839	mitochondrial transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
BP	GO:0042886	amide transport	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070585	protein localization to mitochondrion	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072655	establishment of protein localization to mitochondrion	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	136	186
IPR002885	Pentatricopeptide_repeat	276	324
IPR002885	Pentatricopeptide_repeat	209	249
IPR002885	Pentatricopeptide_repeat	105	132

External Links

No external refs found!

AT4G36680

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation