AT4G36540 (BEE2)

Aliases : BEE2

Description : BR enhanced expression 2

Gene families : OG_01_0000051 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000051_tree ,
OG_02_0000091 (LandPlants) Phylogenetic Tree(s): OG_02_0000091_tree ,
OG_03_0025265 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G36540
Cluster	HCCA: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00133p00027110	evm_27.TU.AmTr_v1...	External stimuli response.light.UV-A/blue...	0.04	Archaeplastida
AT1G10120	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	Archaeplastida
AT3G23690	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.06	Archaeplastida
GSVIVT01011873001	No alias	External stimuli response.light.UV-A/blue...	0.03	Archaeplastida
GSVIVT01013553001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
GSVIVT01023585001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
GSVIVT01025313001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.05	Archaeplastida
GSVIVT01026056001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
GSVIVT01033350001	No alias	External stimuli response.light.UV-A/blue...	0.03	Archaeplastida
GSVIVT01033356001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.06	Archaeplastida
Gb_12493	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.05	Archaeplastida
Gb_36369	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	Archaeplastida
Gb_39758	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	Archaeplastida
LOC_Os06g41060.1	No alias	transcription factor (bHLH)	0.07	Archaeplastida
LOC_Os09g31300.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os11g25560.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.05	Archaeplastida
MA_10344244g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_158362g0010	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
MA_182616g0010	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
MA_42080g0010	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
Pp3c14_24020V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Archaeplastida
Pp3c16_7710V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c5_18850V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
Smo443113	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
Solyc01g109700.3.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.08	Archaeplastida
Solyc02g062690.3.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.06	Archaeplastida
Solyc03g034000.3.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	Archaeplastida
Solyc09g097870.4.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
Zm00001e006042_P001	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	Archaeplastida
Zm00001e011410_P001	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
Zm00001e023327_P001	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
AMTR_s00133p00027110	evm_27.TU.AmTr_v1...	External stimuli response.light.UV-A/blue...	0.04	LandPlants
AT1G10120	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	LandPlants
AT3G23690	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.06	LandPlants
GSVIVT01010126001	No alias	External stimuli response.light.UV-A/blue...	0.02	LandPlants
GSVIVT01011873001	No alias	External stimuli response.light.UV-A/blue...	0.03	LandPlants
GSVIVT01033350001	No alias	External stimuli response.light.UV-A/blue...	0.03	LandPlants
Gb_12493	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	LandPlants
Gb_39758	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	LandPlants
Gb_40829	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	LandPlants
LOC_Os06g41060.1	No alias	transcription factor (bHLH)	0.05	LandPlants
MA_10344244g0010	No alias	no hits & (original description: none)	0.03	LandPlants
MA_158362g0010	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	LandPlants
Pp3c16_7710V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	LandPlants
Solyc01g109700.3.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.06	LandPlants
Solyc02g062690.3.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.06	LandPlants
Solyc03g034000.3.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	LandPlants
Solyc03g119390.4.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	LandPlants
Solyc09g097870.4.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	LandPlants
Solyc12g098620.2.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	LandPlants
Zm00001e022005_P003	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	LandPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IMP	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009740	gibberellic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010162	seed dormancy process	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010476	gibberellin mediated signaling pathway	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022611	dormancy process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	151	198

External Links

No external refs found!

AT4G36540 (BEE2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation