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  5. Len_g56734

Len_g56734 (RECQI1)


Aliases : RECQI1

Description : not classified & original description: none


Gene families : OG0000844 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g56734
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Aop_g22121 ATRECQ4A, ATSGS1, RECQ4A helicase component *(RecQ4A) of RTR Holliday junction... 0.03 OrthoFinder output from all 47 species
Azfi_s0087.g042358 ATRECQ4A, ATSGS1, RECQ4A helicase component *(RecQ4A) of RTR Holliday junction... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.26 RecQl3, ATRECQ3 ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre03.g178950 RECQI1 ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Gb_08699 RECQI1 ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis... 0.11 OrthoFinder output from all 47 species
LOC_Os04g35420.1 ATRECQ4A,... helicase component RecQ4A of RTR Holliday junction... 0.05 OrthoFinder output from all 47 species
MA_10435954g0010 RECQI1 ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_10436537g0010 ATRECQ4A, ATSGS1, RECQ4A helicase component RecQ4A of RTR Holliday junction... 0.09 OrthoFinder output from all 47 species
MA_30494g0010 RECQI1 ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_361558g0010 ATRECQ4A, ATSGS1, RECQ4A ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp4g14290.1 ATRECQ4A, ATSGS1, RECQ4A helicase component RecQ4A of RTR Holliday junction... 0.04 OrthoFinder output from all 47 species
Msp_g21318 ATRECQ4A, ATSGS1, RECQ4A helicase component *(RecQ4A) of RTR Holliday junction... 0.04 OrthoFinder output from all 47 species
Msp_g27927 RECQI1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Smo98462 RECQI1 ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Solyc01g100280.4.1 RECQI1, Solyc01g100280 ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Solyc01g103960.3.1 ATRECQ4A,... helicase component RecQ4A of RTR Holliday junction... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 259 427
IPR001650 Helicase_C 470 571
IPR032284 RecQ_Zn-bd 584 651
No external refs found!