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  5. Smo231226

Smo231226 (PACid_15415243)


Aliases : PACid_15415243

Description : 10.7 cell wall.modification Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A10 (EXPA10) CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112) BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2) Has 2216 Blast hits to 2213 proteins in 165 species: Archae - 0 Bacteria - 8 Metazoa - 0 Fungi - 52 Plants - 2112 Viruses - 0 Other Eukaryotes - 44 (source: NCBI BLink). & (chl4|516806 : 80.5


Gene families : OG_01_0000017 (Gene family) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo231226
Cluster HCCA cluster: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
AT1G69530 ATEXPA1, EXP1,... expansin A1 0.04 Gene family
AT5G39270 EXPA22, ATEXP22,... expansin A22 0.02 Gene family
AT5G39290 ATEXP26, ATHEXP... expansin A26 0.02 Gene family
GSVIVT01029411001 No alias 10.7 cell wall.modification Encodes an expansin. Naming... 0.03 Gene family
GSVIVT01035233001 No alias 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
LOC_Os03g60720 Os03g0822000 10.7 cell wall.modification putative expansin. Naming... 0.01 Gene family
LOC_Os04g15840 Os04g0228400 10.7 cell wall.modification member of Alpha-Expansin... 0.01 Gene family
LOC_Os05g19600 Os05g0277000 10.7 cell wall.modification member of Alpha-Expansin... 0.01 Gene family
LOC_Os10g30340 Os10g0439200 10.7 cell wall.modification member of Alpha-Expansin... 0.01 Gene family
LOC_Os10g39110 Os10g0535900 10.7 cell wall.modification Member of Alpha-Expansin... 0.02 Gene family
MA_178775g0020 No alias 10.7 cell wall.modification member of Alpha-Expansin... 0.01 Gene family
Solyc09g018020.3.1 Solyc09g018020.3 10.7 cell wall.modification Encodes an expansin. Naming... 0.03 Gene family
Zm00001d025018 GRMZM2G074585 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
Zm00001d026014 GRMZM2G072121 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
Zm00001d032876 No alias 10.7 cell wall.modification member of Alpha-Expansin... 0.01 Gene family
Zm00001d032886 GRMZM2G414779 10.7 cell wall.modification member of Alpha-Expansin... 0.01 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 45 123
No external refs found!