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  5. Len_g56640

Len_g56640


Description : REM-type transcription factor & original description: none


Gene families : OG0000663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000663_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g56640
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00151100 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AMTR_s00078p00115450 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AT3G19184 No alias AP2/B3-like transcriptional factor family protein 0.03 OrthoFinder output from all 47 species
AT5G42700 No alias AP2/B3-like transcriptional factor family protein 0.06 OrthoFinder output from all 47 species
AT5G58280 No alias AP2/B3-like transcriptional factor family protein 0.09 OrthoFinder output from all 47 species
Adi_g075571 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g04057 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g28493 No alias REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Als_g15351 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g51859 No alias REM-type transcription factor & original description: none 0.1 OrthoFinder output from all 47 species
Aop_g06897 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g25439 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g36068 No alias REM-type transcription factor & original description: none 0.1 OrthoFinder output from all 47 species
Aspi01Gene04981.t1 Aspi01Gene04981 REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Aspi01Gene24779.t1 Aspi01Gene24779 REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene24780.t1 Aspi01Gene24780 REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene61918.t1 Aspi01Gene61918 REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.02G084400.1 Ceric.02G084400 REM-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.07G043800.1 Ceric.07G043800 REM-type transcription factor & original description:... 0.08 OrthoFinder output from all 47 species
Ceric.14G017400.1 Ceric.14G017400 REM-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.35G050300.1 Ceric.35G050300 REM-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.38G010700.1 Ceric.38G010700 REM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g15058 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g18248 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g41437 No alias REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g43688 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009519001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01031761001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
Gb_07025 No alias transcription factor (REM) 0.05 OrthoFinder output from all 47 species
Gb_35990 No alias transcription factor (REM) 0.06 OrthoFinder output from all 47 species
LOC_Os03g08620.1 LOC_Os03g08620 transcription factor (REM) 0.05 OrthoFinder output from all 47 species
Lfl_g28691 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g29370 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_10433064g0010 No alias transcription factor (REM) 0.03 OrthoFinder output from all 47 species
MA_175090g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp2g08790.1 No alias transcription factor (REM) 0.08 OrthoFinder output from all 47 species
Msp_g09553 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g44971 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g34487 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g35599 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g39771 No alias REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g28568 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01929 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g11582 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g11583 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14471 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004736 No alias REM-type transcription factor & original description: CDS=35-988 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0085.g018379 No alias REM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g14184 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48173 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Solyc04g079130.2.1 Solyc04g079130 transcription factor (REM) 0.09 OrthoFinder output from all 47 species
Solyc06g007530.2.1 Solyc06g007530 transcription factor (REM) 0.02 OrthoFinder output from all 47 species
Solyc06g034140.3.1 Solyc06g034140 transcription factor (REM) 0.04 OrthoFinder output from all 47 species
Spa_g03459 No alias REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g49592 No alias REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g56976 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g00720 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g11017 No alias REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g29854 No alias REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Zm00001e000624_P003 Zm00001e000624 transcription factor (REM) 0.04 OrthoFinder output from all 47 species
Zm00001e020584_P001 Zm00001e020584 transcription factor (REM) 0.04 OrthoFinder output from all 47 species
Zm00001e040028_P004 Zm00001e040028 transcription factor (REM) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 135 225
No external refs found!