Len_g56498

Description : RING-H2-class BTL-subclass E3 ubiquitin ligase & original description: none

Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g56498

Target	Alias	Description	ECC score	Gene Family Method
AT1G60360	No alias	RING/U-box superfamily protein	0.02	OrthoFinder output from all 47 species
Azfi_s0241.g059757	No alias	not classified & original description: CDS=1-1179	0.04	OrthoFinder output from all 47 species
Ceric.34G007400.1	Ceric.34G007400	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
LOC_Os03g20870.1	LOC_Os03g20870	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species
Spa_g39230	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	IEA	Interproscan
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0000149	SNARE binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0019905	syntaxin binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR039525	RNF126-like_zinc-ribbon	10	42
IPR001841	Znf_RING	328	369

External Links

No external refs found!