AT4G34620 (SSR16)


Aliases : SSR16

Description : small subunit ribosomal protein 16


Gene families : OG_01_0001415 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001415_tree ,
OG_02_0002490 (LandPlants) Phylogenetic Tree(s): OG_02_0002490_tree ,
OG_03_0043328 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G34620
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
Cre12.g494450 No alias 30S ribosomal protein S16, chloroplastic OS=Staurastrum... 0.04 Archaeplastida
Pp3c11_14140V3.1 No alias Ribosomal protein S16 family protein 0.07 Archaeplastida
Pp3c1_7830V3.1 No alias Ribosomal protein S16 family protein 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
CC GO:0005840 ribosome ISS Interproscan
CC GO:0005840 ribosome TAS Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009536 plastid IDA Interproscan
BP GO:0009793 embryo development ending in seed dormancy IMP Interproscan
BP GO:0009793 embryo development ending in seed dormancy RCA Interproscan
CC GO:0009941 chloroplast envelope IDA Interproscan
BP GO:0010027 thylakoid membrane organization RCA Interproscan
BP GO:0010228 vegetative to reproductive phase transition of meristem RCA Interproscan
BP GO:0010267 production of ta-siRNAs involved in RNA interference RCA Interproscan
BP GO:0016226 iron-sulfur cluster assembly RCA Interproscan
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA RCA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
BP GO:0048481 plant ovule development RCA Interproscan
BP GO:0051607 defense response to virus RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000307 Ribosomal_S16 9 70
No external refs found!