AT4G34450

Description : coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative

Gene families : OG_01_0003299 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003299_tree ,
OG_02_0003767 (LandPlants) Phylogenetic Tree(s): OG_02_0003767_tree ,
OG_03_0004588 (SeedPlants) Phylogenetic Tree(s): OG_03_0004588_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G34450
Cluster	HCCA: Cluster_120

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00059p00069290	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.08	Archaeplastida
Cpa\|evm.model.tig00020629.20	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.04	Archaeplastida
Cre06.g310750	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.1	Archaeplastida
GSVIVT01031955001	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.15	Archaeplastida
Gb_36850	No alias	subunit gamma of cargo adaptor F-subcomplex	0.12	Archaeplastida
Gb_36851	No alias	Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica...	0.09	Archaeplastida
LOC_Os03g12590.1	No alias	subunit gamma of cargo adaptor F-subcomplex	0.18	Archaeplastida
LOC_Os07g10150.1	No alias	subunit gamma of cargo adaptor F-subcomplex	0.17	Archaeplastida
Mp1g05250.1	No alias	subunit gamma of cargo adaptor F-subcomplex	0.14	Archaeplastida
Pp3c16_12310V3.1	No alias	coatomer gamma-2 subunit, putative / gamma-2 coat...	0.13	Archaeplastida
Pp3c27_4930V3.1	No alias	coatomer gamma-2 subunit, putative / gamma-2 coat...	0.05	Archaeplastida
Pp3c5_5240V3.1	No alias	coatomer gamma-2 subunit, putative / gamma-2 coat...	0.02	Archaeplastida
Smo268757	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.07	Archaeplastida
Solyc01g109540.4.1	No alias	subunit gamma of cargo adaptor F-subcomplex	0.18	Archaeplastida
Zm00001e000949_P001	No alias	subunit gamma of cargo adaptor F-subcomplex	0.17	Archaeplastida
Zm00001e011398_P002	No alias	subunit gamma of cargo adaptor F-subcomplex	0.2	Archaeplastida
Zm00001e033065_P001	No alias	subunit gamma of cargo adaptor F-subcomplex	0.17	Archaeplastida
AMTR_s00059p00069290	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.07	LandPlants
GSVIVT01031955001	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.15	LandPlants
Gb_20396	No alias	subunit gamma of cargo adaptor F-subcomplex	0.02	LandPlants
Gb_36850	No alias	subunit gamma of cargo adaptor F-subcomplex	0.11	LandPlants
LOC_Os03g12590.1	No alias	subunit gamma of cargo adaptor F-subcomplex	0.18	LandPlants
LOC_Os07g10150.1	No alias	subunit gamma of cargo adaptor F-subcomplex	0.17	LandPlants
Mp1g05250.1	No alias	subunit gamma of cargo adaptor F-subcomplex	0.12	LandPlants
Pp3c16_12310V3.1	No alias	coatomer gamma-2 subunit, putative / gamma-2 coat...	0.13	LandPlants
Pp3c27_4930V3.1	No alias	coatomer gamma-2 subunit, putative / gamma-2 coat...	0.03	LandPlants
Pp3c5_5240V3.1	No alias	coatomer gamma-2 subunit, putative / gamma-2 coat...	0.02	LandPlants
Smo268757	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.06	LandPlants
Solyc01g109540.4.1	No alias	subunit gamma of cargo adaptor F-subcomplex	0.16	LandPlants
Zm00001e000949_P001	No alias	subunit gamma of cargo adaptor F-subcomplex	0.17	LandPlants
Zm00001e011398_P002	No alias	subunit gamma of cargo adaptor F-subcomplex	0.2	LandPlants
Zm00001e033065_P001	No alias	subunit gamma of cargo adaptor F-subcomplex	0.16	LandPlants
AMTR_s00059p00069290	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.07	SeedPlants
GSVIVT01031955001	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.15	SeedPlants
Gb_20396	No alias	subunit gamma of cargo adaptor F-subcomplex	0.02	SeedPlants
Gb_36850	No alias	subunit gamma of cargo adaptor F-subcomplex	0.11	SeedPlants
LOC_Os03g12590.1	No alias	subunit gamma of cargo adaptor F-subcomplex	0.18	SeedPlants
LOC_Os07g10150.1	No alias	subunit gamma of cargo adaptor F-subcomplex	0.17	SeedPlants
Solyc01g109540.4.1	No alias	subunit gamma of cargo adaptor F-subcomplex	0.16	SeedPlants
Zm00001e000949_P001	No alias	subunit gamma of cargo adaptor F-subcomplex	0.17	SeedPlants
Zm00001e011398_P002	No alias	subunit gamma of cargo adaptor F-subcomplex	0.2	SeedPlants
Zm00001e033065_P001	No alias	subunit gamma of cargo adaptor F-subcomplex	0.16	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006094	gluconeogenesis	RCA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006486	protein glycosylation	None	Extended
BP	GO:0006487	protein N-linked glycosylation	RCA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	RCA	Interproscan
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019319	hexose biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
MF	GO:0030276	clathrin binding	ISS	Interproscan
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043413	macromolecule glycosylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046364	monosaccharide biosynthetic process	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0070085	glycosylation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002553	Clathrin/coatomer_adapt-like_N	29	540
IPR032154	Coatomer_g_Cpla	769	883
IPR013040	Coatomer_gsu_app_Ig-like_dom	622	766

External Links

No external refs found!

AT4G34450

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation