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  5. Len_g55562

Len_g55562 (ATCFM2, CFM2)


Aliases : ATCFM2, CFM2

Description : not classified & original description: none


Gene families : OG0001162 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001162_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g55562

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00114550 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00079p00107040 EMB1865,... CRM-domain containing factor CFM3,... 0.04 OrthoFinder output from all 47 species
AMTR_s00079p00185530 ATCRS1, CRS1,... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AT3G23070 ATCFM3A, CFM3A CRM family member 3A 0.03 OrthoFinder output from all 47 species
AT4G14510 ATCFM3B, CFM3B CRM family member 3B 0.05 OrthoFinder output from all 47 species
AT5G16180 ATCRS1, CRS1 ortholog of maize chloroplast splicing factor CRS1 0.04 OrthoFinder output from all 47 species
Adi_g059394 ATCFM2, CFM2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g01593 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.02 OrthoFinder output from all 47 species
Ala_g21267 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g27469 ATCFM2, CFM2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0015.g013833 ATCFM2, CFM2 not classified & original description: CDS=1-3243 0.03 OrthoFinder output from all 47 species
Ceric.05G053300.1 ATCFM2, CFM2,... not classified & original description: pacid=50577844... 0.04 OrthoFinder output from all 47 species
Ceric.23G047600.1 ATCFM2, CFM2,... not classified & original description: pacid=50611491... 0.05 OrthoFinder output from all 47 species
Ceric.31G056300.1 ATCFM2, CFM2,... not classified & original description: pacid=50573909... 0.06 OrthoFinder output from all 47 species
Dcu_g07763 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g13607 ATCFM3A, CFM3A not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g18891 ATCFM2, CFM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12628 EMB1865 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21472 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01018109001 ATCFM3A, CFM3A RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01031001001 ATCRS1, CRS1 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01032542001 ATCFM2, CFM2 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Gb_18301 ATCFM2, CFM2 CRM-domain containing factor CFM2, chloroplastic... 0.03 OrthoFinder output from all 47 species
Gb_37638 ATCFM3A, CFM3A CFM2-type plastidial RNA splicing factor. CFM3-type... 0.04 OrthoFinder output from all 47 species
Lfl_g03478 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.03 OrthoFinder output from all 47 species
MA_10233916g0010 ATCFM2, CFM2 CRM-domain containing factor CFM2, chloroplastic... 0.02 OrthoFinder output from all 47 species
MA_10432072g0010 ATCFM3A, CFM3A CFM2-type plastidial RNA splicing factor 0.05 OrthoFinder output from all 47 species
MA_10435740g0010 EMB1865 CFM2-type plastidial RNA splicing factor 0.02 OrthoFinder output from all 47 species
MA_8161870g0010 ATCFM2, CFM2 CRM-domain containing factor CFM2, chloroplastic... 0.02 OrthoFinder output from all 47 species
Mp3g06280.1 ATCFM2, CFM2 CRM-domain containing factor CFM3,... 0.02 OrthoFinder output from all 47 species
Nbi_g10122 ATCFM2, CFM2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g17170 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35546 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.04 OrthoFinder output from all 47 species
Pir_g18629 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g46980 ATCFM3A, CFM3A not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g63142 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo120007 No alias CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
Solyc03g119450.3.1 EMB1865, Solyc03g119450 CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
Solyc07g039500.4.1 Solyc07g039500 CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
Solyc09g083350.3.1 ATCFM3A, CFM3A,... CFM3-type plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Spa_g04443 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e011272_P001 ATCFM3A, CFM3A,... CFM3-type plastidial RNA splicing factor 0.08 OrthoFinder output from all 47 species
Zm00001e033939_P001 Zm00001e033939 CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 528 610
IPR001890 RNA-binding_CRM 751 829
IPR001890 RNA-binding_CRM 946 1032
No external refs found!