AT4G33210 (SLOMO)

Aliases : SLOMO

Description : F-box family protein

Gene families : OG_01_0003439 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003439_tree ,
OG_02_0003770 (LandPlants) Phylogenetic Tree(s): OG_02_0003770_tree ,
OG_03_0004571 (SeedPlants) Phylogenetic Tree(s): OG_03_0004571_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G33210
Cluster	HCCA: Cluster_22

Target	Alias	Description	ECC score	Gene Family Method
Cre12.g525600	No alias	No description available	0.02	Archaeplastida
LOC_Os10g25680.1	No alias	F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana...	0.03	Archaeplastida
MA_10276236g0010	No alias	F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana...	0.05	Archaeplastida
MA_33148g0010	No alias	F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Mp4g13760.1	No alias	F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Solyc08g061820.3.1	No alias	F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Zm00001e004850_P002	No alias	F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana...	0.03	Archaeplastida
GSVIVT01035469001	No alias	F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana	0.02	LandPlants
LOC_Os10g25680.1	No alias	F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana...	0.03	LandPlants
MA_33148g0010	No alias	F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana...	0.03	LandPlants
MA_783512g0010	No alias	F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana...	0.02	LandPlants
Mp4g13760.1	No alias	F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana...	0.02	LandPlants
Solyc08g061820.3.1	No alias	F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana...	0.04	LandPlants
Zm00001e004850_P002	No alias	F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana...	0.03	LandPlants
GSVIVT01035469001	No alias	F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana	0.02	SeedPlants
LOC_Os10g25680.1	No alias	F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana...	0.03	SeedPlants
MA_33148g0010	No alias	F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana...	0.03	SeedPlants
MA_783512g0010	No alias	F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana...	0.02	SeedPlants
Solyc08g061820.3.1	No alias	F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana...	0.04	SeedPlants
Zm00001e004850_P002	No alias	F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana...	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	TAS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010252	auxin homeostasis	IMP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048645	animal organ formation	IMP	Interproscan
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001810	F-box_dom	198	237

External Links

No external refs found!

AT4G33210 (SLOMO)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation