Smo227897 (PACid_15407865)


Aliases : PACid_15407865

Description : 29.5.11.20 protein.degradation.ubiquitin.proteasom Encodes 20S proteasome subunit PBA1 (PBA1). PBA1 FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity INVOLVED IN: response to zinc ion, ubiquitin-dependent protein catabolic process LOCATED IN: proteasome core complex, proteasome complex EXPRESSED IN: 23 plant structures EXPRESSED DURING: 14 growth stages CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome, subunit alpha/beta (InterPro:IPR001353), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243) BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit PBB2 (TAIR:AT5G40580.2). & (loc_os06g04800.1 : 301.0


Gene families : OG_01_0004265 (Gene family) Phylogenetic Tree(s): OG0004265_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo227897
Cluster HCCA cluster: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001098.5 No alias 29.5.11.20 protein.degradation.ubiquitin.proteasom... 0.02 Gene family
Cre06.g279000 No alias 29.5.11.20 protein.degradation.ubiquitin.proteasom... 0.05 Gene family
Cre12.g531100 No alias 29.5.11.20 protein.degradation.ubiquitin.proteasom... 0.05 Gene family
GSVIVT01032253001 No alias 29.5.11.20 protein.degradation.ubiquitin.proteasom... 0.04 Gene family
GSVIVT01035567001 No alias 29.5.11.20 protein.degradation.ubiquitin.proteasom... 0.02 Gene family
LOC_Os02g53060 Os02g0770000 29.5.11.20 protein.degradation.ubiquitin.proteasom... 0.06 Gene family
LOC_Os06g04800 Os06g0139900 29.5.11.20 protein.degradation.ubiquitin.proteasom... 0.05 Gene family
Solyc07g016200.3.1 Solyc07g016200.3 29.5.11.20 protein.degradation.ubiquitin.proteasom... 0.03 Gene family
Zm00001d036108 GRMZM2G152775 29.5.11.20 protein.degradation.ubiquitin.proteasom... 0.04 Gene family
Zm00001d045403 GRMZM2G002976,... 29.5.11.20 protein.degradation.ubiquitin.proteasom... 0.03 Gene family

Type GO Term Name Evidence Source
CC GO:0005839 proteasome core complex IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 16 196
No external refs found!