AT4G30825


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0007364 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007364_tree ,
OG_02_0005355 (LandPlants) Phylogenetic Tree(s): OG_02_0005355_tree ,
OG_03_0010911 (SeedPlants) Phylogenetic Tree(s): OG_03_0010911_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G30825
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.06 Archaeplastida
GSVIVT01014050001 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.05 Archaeplastida
Gb_06104 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.06 Archaeplastida
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.08 Archaeplastida
Pp3c5_2530V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.09 Archaeplastida
Solyc07g005950.4.1 No alias no hits & (original description: none) 0.09 Archaeplastida
Zm00001e040095_P002 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 Archaeplastida
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.06 LandPlants
GSVIVT01014050001 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.05 LandPlants
Gb_06104 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 LandPlants
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.07 LandPlants
Pp3c5_2530V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 LandPlants
Solyc07g005950.4.1 No alias no hits & (original description: none) 0.09 LandPlants
Zm00001e040095_P002 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 LandPlants
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.06 SeedPlants
GSVIVT01014050001 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.06 SeedPlants
Gb_06104 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 SeedPlants
LOC_Os09g25550.1 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 SeedPlants
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.05 SeedPlants
Solyc07g005950.4.1 No alias no hits & (original description: none) 0.09 SeedPlants
Zm00001e040095_P002 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0016556 mRNA modification RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 836 883
IPR002885 Pentatricopeptide_repeat 347 393
IPR002885 Pentatricopeptide_repeat 770 811
IPR002885 Pentatricopeptide_repeat 562 589
IPR002885 Pentatricopeptide_repeat 281 309
IPR002885 Pentatricopeptide_repeat 317 345
IPR002885 Pentatricopeptide_repeat 490 513
IPR002885 Pentatricopeptide_repeat 734 764
IPR002885 Pentatricopeptide_repeat 596 621
IPR002885 Pentatricopeptide_repeat 205 257
IPR002885 Pentatricopeptide_repeat 656 711
No external refs found!