1. Home
  2. Species
  3. Lindsaea ensifolia
  4. Sequence
  5. Len_g50910

Len_g50910 (XRN3, AtXRN3)


Aliases : XRN3, AtXRN3

Description : exoribonuclease *(RAT1/XRN2) & original description: none


Gene families : OG0000769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000769_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g50910

Target Alias Description ECC score Gene Family Method Actions
AT1G54490 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease 4 0.02 OrthoFinder output from all 47 species
Adi_g056473 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069080 XRN3, AtXRN3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g11412 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67537.t1 EIN5, AIN1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g24148 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.08G059400.1 EIN5, AIN1,... exoribonuclease *(XRN4) & original description:... 0.03 OrthoFinder output from all 47 species
GSVIVT01009879001 XRN3, AtXRN3 RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
LOC_Os03g58060.1 EIN5, AIN1,... EBF-modulating exoribonuclease (EIN5/XRN4).... 0.02 OrthoFinder output from all 47 species
Mp3g08820.1 XRN3, AtXRN3 exoribonuclease (RAT1/XRN2) 0.02 OrthoFinder output from all 47 species
Nbi_g13698 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19708 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g049010.3.1 EIN5, AIN1,... EBF-modulating exoribonuclease (EIN5/XRN4).... 0.05 OrthoFinder output from all 47 species
Zm00001e011879_P001 EIN5, AIN1,... EBF-modulating exoribonuclease (EIN5/XRN4).... 0.03 OrthoFinder output from all 47 species
Zm00001e021652_P001 XRN3, AtXRN3,... exoribonuclease (RAT1/XRN2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004527 exonuclease activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
MF GO:0140612 DNA damage sensor activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140664 ATP-dependent DNA damage sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR041412 Xrn1_helical 326 819
IPR001878 Znf_CCHC 263 277
IPR004859 Xrn1_N 1 253
No external refs found!