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  5. Len_g49897

Len_g49897


Description : component *(eS12) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001020 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001020_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g49897

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00095p00079060 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
AT1G15930 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.04 OrthoFinder output from all 47 species
AT2G32060 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.04 OrthoFinder output from all 47 species
Ala_g38702 No alias component *(eS12) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Aop_g67327 No alias component *(eS12) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cba_g68172 No alias component *(eS12) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.37G058700.1 Ceric.37G058700 component *(eS12) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.37G058800.1 Ceric.37G058800 component *(eS12) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020903.34 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Cre04.g214503 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder output from all 47 species
Dac_g03015 No alias component *(eS12) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01034219001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Gb_19269 No alias component RPS12 of SSU proteome 0.04 OrthoFinder output from all 47 species
LOC_Os07g05580.1 LOC_Os07g05580 component RPS12 of SSU proteome 0.02 OrthoFinder output from all 47 species
LOC_Os07g12650.1 LOC_Os07g12650 component RPS12 of SSU proteome 0.03 OrthoFinder output from all 47 species
Mp7g11470.1 No alias component RPS12 of SSU proteome 0.06 OrthoFinder output from all 47 species
Ppi_g50714 No alias component *(eS12) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g04208 No alias component *(eS12) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g18573 No alias component *(eS12) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Smo441919 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Solyc01g103800.3.1 Solyc01g103800 component RPS12 of SSU proteome 0.06 OrthoFinder output from all 47 species
Solyc12g042650.2.1 Solyc12g042650 component RPS12 of SSU proteome 0.05 OrthoFinder output from all 47 species
Spa_g17185 No alias component *(eS12) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Spa_g22036 No alias component *(eS12) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e009380_P001 Zm00001e009380 component RPS12 of SSU proteome 0.05 OrthoFinder output from all 47 species
Zm00001e033149_P001 Zm00001e033149 component RPS12 of SSU proteome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0035673 oligopeptide transmembrane transporter activity IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043461 proton-transporting ATP synthase complex assembly IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
MF GO:1904680 peptide transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 29 120
No external refs found!