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  5. Smo180454

Smo180454 (PACid_15413303)


Aliases : PACid_15413303

Description : 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING ARIADNE 8 (ARI8) FUNCTIONS IN: ubiquitin-protein ligase activity LOCATED IN: intracellular EXPRESSED IN: 24 plant structures EXPRESSED DURING: 15 growth stages CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, RanBP2-type (InterPro:IPR001876) BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1) Has 2973 Blast hits to 2950 proteins in 222 species: Archae - 0 Bacteria - 0 Metazoa - 1311 Fungi - 559 Plants - 644 Viruses - 3 Other Eukaryotes - 456 (source: NCBI BLink). & (chl4|516711 : 476.0


Gene families : OG_01_0000876 (Gene family) Phylogenetic Tree(s): OG0000876_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo180454
Cluster HCCA cluster: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01003757001 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
GSVIVT01010742001 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
Solyc06g073340.3.1 Solyc06g073340.3 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
Zm00001d003207 GRMZM5G876621 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
Zm00001d031694 GRMZM2G143644 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.05 Gene family
Zm00001d052709 GRMZM2G100913 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.03 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002867 IBR_dom 266 313
No external refs found!