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  5. Smo179212

Smo179212 (PACid_15408334)


Aliases : PACid_15408334

Description : 10.7 cell wall.modification Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A10 (EXPA10) CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112) BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2) Has 2216 Blast hits to 2213 proteins in 165 species: Archae - 0 Bacteria - 8 Metazoa - 0 Fungi - 52 Plants - 2112 Viruses - 0 Other Eukaryotes - 44 (source: NCBI BLink). & (q40636|expa2_orysa : 359.0


Gene families : OG_01_0000017 (Gene family) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo179212
Cluster HCCA cluster: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
AT3G15370 ATHEXP ALPHA... expansin 12 0.02 Gene family
Solyc03g115270.2.1 Solyc03g115270.2 10.7 cell wall.modification member of Alpha-Expansin... 0.01 Gene family
Zm00001d031906 GRMZM2G030531 10.7 cell wall.modification member of Alpha-Expansin... 0.01 Gene family
Zm00001d031907 GRMZM2G106899 10.7 cell wall.modification member of Alpha-Expansin... 0.01 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 190 267
No external refs found!