Smo179212 (PACid_15408334)


Aliases : PACid_15408334

Description : 10.7 cell wall.modification Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A10 (EXPA10) CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112) BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2) Has 2216 Blast hits to 2213 proteins in 165 species: Archae - 0 Bacteria - 8 Metazoa - 0 Fungi - 52 Plants - 2112 Viruses - 0 Other Eukaryotes - 44 (source: NCBI BLink). & (q40636|expa2_orysa : 359.0


Gene families : OG_01_0000017 (Gene family) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo179212
Cluster HCCA cluster: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
AT3G15370 ATHEXP ALPHA... expansin 12 0.02 Gene family
Solyc03g115270.2.1 Solyc03g115270.2 10.7 cell wall.modification member of Alpha-Expansin... 0.01 Gene family
Zm00001d031906 GRMZM2G030531 10.7 cell wall.modification member of Alpha-Expansin... 0.01 Gene family
Zm00001d031907 GRMZM2G106899 10.7 cell wall.modification member of Alpha-Expansin... 0.01 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007117 Expansin_CBD 190 267
No external refs found!