Smo177444 (PACid_15404071)


Aliases : PACid_15404071

Description : 28.1 DNA.synthesis/chromatin structure RNA helicase family protein FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding INVOLVED IN: biological_process unknown LOCATED IN: chloroplast CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021) BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT1G58050.1) Has 14563 Blast hits to 8989 proteins in 1532 species: Archae - 4 Bacteria - 6119 Metazoa - 3212 Fungi - 1916 Plants - 1040 Viruses - 151 Other Eukaryotes - 2121 (source: NCBI BLink). & (loc_os04g35260.2 : 958.0


Gene families : OG_01_0000624 (Gene family) Phylogenetic Tree(s): OG0000624_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo177444
Cluster HCCA cluster: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
AT1G58060 No alias RNA helicase family protein 0.03 Gene family
AT5G04895 No alias DEA(D/H)-box RNA helicase family protein 0.03 Gene family
Cpa|evm.model.tig00000786.1 No alias 28.99 DNA.unspecified DEA(D/H)-box RNA helicase family protein 0.04 Gene family
LOC_Os01g02884 Os01g0118100 28.99 DNA.unspecified DEA(D/H)-box RNA helicase family protein 0.03 Gene family
LOC_Os10g33275 Os10g0471350 28.1 DNA.synthesis/chromatin structure RNA helicase... 0.03 Gene family
MA_10437209g0010 No alias 28.1 DNA.synthesis/chromatin structure DEA(D/H)-box RNA... 0.01 Gene family
Solyc01g006710.3.1 Solyc01g006710.3 28.1 DNA.synthesis/chromatin structure DEA(D/H)-box RNA... 0.02 Gene family
Zm00001d003655 GRMZM2G013283 28.1 DNA.synthesis/chromatin structure RNA helicase... 0.03 Gene family
Zm00001d032735 GRMZM2G399212 28.1 DNA.synthesis/chromatin structure RNA helicase... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 1075 1173
No external refs found!