Smo175555 (PACid_15421323)


Aliases : PACid_15421323

Description : 29.5.11.4.99 protein.degradation.ubiquitin.E3.unspecified Encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B. histone mono-ubiquitination 2 (HUB2) CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841) BEST Arabidopsis thaliana protein match is: histone mono-ubiquitination 1 (TAIR:AT2G44950.1). & (chl4|515507 : 102.0


Gene families : OG_01_0001524 (Gene family) Phylogenetic Tree(s): OG0001524_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo175555
Cluster HCCA cluster: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
AT1G55250 HUB2 histone mono-ubiquitination 2 0.02 Gene family
AT2G44950 RDO4, HUB1 histone mono-ubiquitination 1 0.02 Gene family
Cpa|evm.model.tig00000169.18 No alias 29.5.11.4.99... 0.02 Gene family
Cre14.g625802 No alias 29.5.11.4.99... 0.01 Gene family
GSVIVT01018223001 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING The... 0.08 Gene family
GSVIVT01025404001 No alias 29.5.11.4.99... 0.03 Gene family
LOC_Os04g46450 Os04g0550400 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING The... 0.05 Gene family
LOC_Os10g41590 Os10g0565600 29.5.11.4.99... 0.02 Gene family
MA_10430809g0010 No alias 29.5.11.4.99... 0.02 Gene family
MA_10430809g0020 No alias 29.5.11.4.99... 0.02 Gene family
Solyc01g006040.3.1 Solyc01g006040.3 29.5.11.4.99... 0.04 Gene family
Solyc11g013370.2.1 Solyc11g013370.2 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING The... 0.02 Gene family
Zm00001d014640 GRMZM2G162184 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING The... 0.09 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!