Smo173599 (PACid_15415726)

Aliases : PACid_15415726

Description : 27.4 RNA.RNA binding encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. C-terminal domain phosphatase-like 1 (CPL1) FUNCTIONS IN: double-stranded RNA binding, phosphatase activity, nucleotide phosphatase activity INVOLVED IN: abscisic acid mediated signaling pathway, negative regulation of transcription, response to abiotic stimulus LOCATED IN: intracellular CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), NLI interacting factor (InterPro:IPR004274) BEST Arabidopsis thaliana protein match is: carboxyl-terminal domain (ctd

Gene families : OG_01_0002059 (Gene family) Phylogenetic Tree(s): OG0002059_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): Smo173599
Cluster HCCA cluster: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AT4G21670 ATCPL1, CPL1, FRY2 C-terminal domain phosphatase-like 1 0.02 Gene family
AT5G01270 CPL2, ATCPL2 carboxyl-terminal domain (ctd) phosphatase-like 2 0.04 Gene family
LOC_Os02g42600 Os02g0639000 27.4 RNA.RNA binding encodes a a novel transcriptional... 0.01 Gene family
Solyc02g078550.3.1 Solyc02g078550.3 27.4 RNA.RNA binding encodes a a novel transcriptional... 0.03 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR014720 dsRBD_dom 594 652
No external refs found!