Smo172795 (PACid_15414360)

Aliases : PACid_15414360

Description : protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S6 RPS6A and RPS6B are fully redundant and essential during gametogenesis. embryo defective 3010 (EMB3010) CONTAINS InterPro DOMAIN/s: Ribosomal protein S6e (InterPro:IPR001377), Ribosomal protein S6e, conserved site (InterPro:IPR018282) BEST Arabidopsis thaliana protein match is: ribosomal protein S6 (TAIR:AT4G31700.1). & (chl4|526098 : 292.0

Gene families : OG_01_0002789 (Gene family) Phylogenetic Tree(s): OG0002789_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): Smo172795
Cluster HCCA cluster: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AT4G31700 RPS6A, RPS6 ribosomal protein S6 0.22 Gene family
AT5G10360 EMB3010, RPS6B Ribosomal protein S6e 0.22 Gene family
Cpa|evm.model.tig00000704.73 No alias protein.synthesis.ribosomal... 0.22 Gene family
Cre09.g400650 No alias protein.synthesis.ribosomal... 0.19 Gene family
GSVIVT01009072001 No alias protein.synthesis.ribosomal... 0.11 Gene family
GSVIVT01015776001 No alias protein.synthesis.ribosomal... 0.06 Gene family
LOC_Os03g27260 Os03g0390000 protein.synthesis.ribosomal... 0.23 Gene family
LOC_Os07g42950 Os07g0622100 protein.synthesis.ribosomal... 0.21 Gene family
MA_10426804g0010 No alias protein.synthesis.ribosomal... 0.07 Gene family
MA_72828g0010 No alias protein.synthesis.ribosomal... 0.06 Gene family
Solyc08g006040.3.1 Solyc08g006040.3 protein.synthesis.ribosomal... 0.13 Gene family
Solyc08g074240.3.1 Solyc08g074240.3 protein.synthesis.ribosomal... 0.24 Gene family
Solyc12g096300.2.1 Solyc12g096300.2 protein.synthesis.ribosomal... 0.16 Gene family
Zm00001d006899 GRMZM5G851698 protein.synthesis.ribosomal... 0.25 Gene family
Zm00001d022180 GRMZM2G054136 protein.synthesis.ribosomal... 0.01 Gene family

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001377 Ribosomal_S6e 1 128
No external refs found!