Smo171427 (PACid_15408856)


Aliases : PACid_15408856

Description : 10.7 cell wall.modification putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin B3 (EXPB3) INVOLVED IN: response to cyclopentenone, syncytium formation, plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening LOCATED IN: endomembrane system, extracellular region EXPRESSED IN: 21 plant structures EXPRESSED DURING: 13 growth stages CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117) BEST Arabidopsis thaliana protein match is: expansin B1 (TAIR:AT2G20750.1) Has 2090 Blast hits to 2086 proteins in 147 species: Archae - 0 Bacteria - 32 Metazoa - 0 Fungi - 5 Plants - 2024 Viruses - 0 Other Eukaryotes - 29 (source: NCBI BLink). (original description: no original description)'


Gene families : OG_01_0000141 (Gene family) Phylogenetic Tree(s): OG0000141_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo171427
Cluster HCCA cluster: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT1G65680 ATHEXP BETA 1.4,... expansin B2 0.02 Gene family
LOC_Os02g44108 Os02g0658800 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.02 Gene family
LOC_Os04g46650 Os04g0552200 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.04 Gene family
LOC_Os10g40090 Os10g0548600 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.02 Gene family
LOC_Os10g40700 Os10g0555600 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.02 Gene family
LOC_Os10g40720 Os10g0555900 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.03 Gene family
Solyc10g008440.3.1 Solyc10g008440.3 10.7 cell wall.modification putative... 0.02 Gene family
Solyc10g018500.1.1 Solyc10g018500.1 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.02 Gene family
Zm00001d017377 GRMZM2G169967 10.7 cell wall.modification putative... 0.02 Gene family
Zm00001d017495 GRMZM2G056236 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.04 Gene family
Zm00001d019560 GRMZM2G154178 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.02 Gene family
Zm00001d026169 GRMZM2G100931 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.05 Gene family
Zm00001d027281 GRMZM2G097229 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.02 Gene family
Zm00001d029903 GRMZM2G021427 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.04 Gene family
Zm00001d045861 GRMZM2G121308 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.02 Gene family
Zm00001d047089 GRMZM2G013671 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.02 Gene family
Zm00001d047094 GRMZM2G073260 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.03 Gene family
Zm00001d047142 GRMZM2G020852,... 10.7 cell wall.modification member of BETA-EXPANSINS.... 0.02 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 41 121
No external refs found!