AT4G24770 (ATRBP31, CP31, ATRBP33, RBP31)

Aliases : ATRBP31, CP31, ATRBP33, RBP31

Description : 31-kDa RNA binding protein

Gene families : OG_01_0000043 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000043_tree ,
OG_02_0000810 (LandPlants) Phylogenetic Tree(s): OG_02_0000810_tree ,
OG_03_0003594 (SeedPlants) Phylogenetic Tree(s): OG_03_0003594_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G24770
Cluster	HCCA: Cluster_116

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00008p00202090	evm_27.TU.AmTr_v1...	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana	0.06	Archaeplastida
AMTR_s00061p00032260	evm_27.TU.AmTr_v1...	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana	0.09	Archaeplastida
AMTR_s00061p00142700	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.07	Archaeplastida
AMTR_s00148p00072380	evm_27.TU.AmTr_v1...	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris	0.04	Archaeplastida
AMTR_s00166p00060690	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.04	Archaeplastida
AT4G13850	GRP2, ATGRP2, GR-RBP2	glycine-rich RNA-binding protein 2	0.03	Archaeplastida
Cpa\|evm.model.tig00000944.16	No alias	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana	0.02	Archaeplastida
Cre09.g392350	No alias	Glycine-rich RNA-binding protein 2, mitochondrial...	0.01	Archaeplastida
GSVIVT01007596001	No alias	RNA processing.organelle machineries.RNA...	0.15	Archaeplastida
GSVIVT01025697001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris	0.17	Archaeplastida
GSVIVT01027917001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris	0.19	Archaeplastida
GSVIVT01030490001	No alias	Glycine-rich RNA-binding protein 4, mitochondrial...	0.01	Archaeplastida
GSVIVT01032361001	No alias	RNA processing.organelle machineries.RNA...	0.22	Archaeplastida
Gb_00173	No alias	RNA editing factor (CP31)	0.01	Archaeplastida
Gb_05747	No alias	component psPSRP2 of small ribosomal subunit proteome	0.04	Archaeplastida
Gb_09687	No alias	Organelle RRM domain-containing protein 6, chloroplastic...	0.08	Archaeplastida
Gb_29798	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.09	Archaeplastida
Gb_32176	No alias	component psPSRP2 of small ribosomal subunit proteome	0.04	Archaeplastida
Gb_37522	No alias	Organelle RRM domain-containing protein 1, chloroplastic...	0.08	Archaeplastida
Gb_39591	No alias	Organelle RRM domain-containing protein 6, chloroplastic...	0.04	Archaeplastida
LOC_Os02g57010.1	No alias	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.1	Archaeplastida
LOC_Os03g25960.1	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.2	Archaeplastida
LOC_Os07g06450.1	No alias	RNA-binding protein CP33, chloroplastic OS=Arabidopsis...	0.12	Archaeplastida
LOC_Os08g44290.1	No alias	RNA editing factor (CP31)	0.07	Archaeplastida
LOC_Os09g39180.1	No alias	RNA editing factor (CP31)	0.17	Archaeplastida
MA_10434075g0010	No alias	component psPSRP2 of small ribosomal subunit proteome	0.02	Archaeplastida
MA_320479g0010	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.1	Archaeplastida
MA_367032g0010	No alias	no hits & (original description: none)	0.1	Archaeplastida
MA_474396g0010	No alias	RNA editing factor (CP31)	0.07	Archaeplastida
MA_7844926g0010	No alias	Organelle RRM domain-containing protein 1, chloroplastic...	0.03	Archaeplastida
Mp2g13800.1	No alias	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.3	Archaeplastida
Mp3g24820.1	No alias	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis...	0.04	Archaeplastida
Mp8g03420.1	No alias	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.04	Archaeplastida
Pp3c12_9890V3.1	No alias	chloroplast RNA-binding protein 29	0.09	Archaeplastida
Pp3c8_16740V3.1	No alias	chloroplast RNA-binding protein 29	0.09	Archaeplastida
Solyc01g006940.4.1	No alias	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.23	Archaeplastida
Solyc03g111840.3.1	No alias	RNA editing factor (CP31)	0.31	Archaeplastida
Solyc09g007850.3.1	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.08	Archaeplastida
Solyc09g090960.4.1	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.12	Archaeplastida
Solyc10g086150.2.1	No alias	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana...	0.13	Archaeplastida
Zm00001e001824_P002	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.05	Archaeplastida
Zm00001e003947_P001	No alias	RNA editing factor (CP31)	0.09	Archaeplastida
Zm00001e010844_P001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.03	Archaeplastida
Zm00001e016211_P001	No alias	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.04	Archaeplastida
Zm00001e022086_P002	No alias	RNA editing factor (CP31)	0.24	Archaeplastida
Zm00001e032835_P001	No alias	RNA-binding protein CP33, chloroplastic OS=Arabidopsis...	0.23	Archaeplastida
Zm00001e033465_P001	No alias	RNA editing factor (CP31)	0.23	Archaeplastida
Zm00001e035630_P001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.05	Archaeplastida
AMTR_s00061p00142700	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.08	LandPlants
AMTR_s00148p00072380	evm_27.TU.AmTr_v1...	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris	0.03	LandPlants
AMTR_s00166p00060690	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.04	LandPlants
GSVIVT01007596001	No alias	RNA processing.organelle machineries.RNA...	0.15	LandPlants
GSVIVT01025697001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris	0.16	LandPlants
GSVIVT01027917001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris	0.19	LandPlants
GSVIVT01032361001	No alias	RNA processing.organelle machineries.RNA...	0.22	LandPlants
Gb_00173	No alias	RNA editing factor (CP31)	0.01	LandPlants
Gb_29798	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.08	LandPlants
Gb_32176	No alias	component psPSRP2 of small ribosomal subunit proteome	0.04	LandPlants
LOC_Os02g57010.1	No alias	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.11	LandPlants
LOC_Os03g25960.1	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.2	LandPlants
LOC_Os08g44290.1	No alias	RNA editing factor (CP31)	0.07	LandPlants
LOC_Os09g39180.1	No alias	RNA editing factor (CP31)	0.18	LandPlants
MA_185349g0010	No alias	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana...	0.02	LandPlants
MA_320479g0010	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.09	LandPlants
MA_474396g0010	No alias	RNA editing factor (CP31)	0.06	LandPlants
Mp2g13800.1	No alias	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.29	LandPlants
Mp3g24820.1	No alias	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis...	0.04	LandPlants
Mp8g03420.1	No alias	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.04	LandPlants
Pp3c12_9890V3.1	No alias	chloroplast RNA-binding protein 29	0.08	LandPlants
Solyc03g111840.3.1	No alias	RNA editing factor (CP31)	0.32	LandPlants
Solyc09g007850.3.1	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.08	LandPlants
Solyc09g090960.4.1	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.13	LandPlants
Solyc10g086150.2.1	No alias	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana...	0.13	LandPlants
Zm00001e001824_P002	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.05	LandPlants
Zm00001e003947_P001	No alias	RNA editing factor (CP31)	0.09	LandPlants
Zm00001e010844_P001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.02	LandPlants
Zm00001e016211_P001	No alias	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.04	LandPlants
Zm00001e022086_P002	No alias	RNA editing factor (CP31)	0.24	LandPlants
Zm00001e033465_P001	No alias	RNA editing factor (CP31)	0.23	LandPlants
Zm00001e035630_P001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.05	LandPlants
AMTR_s00061p00142700	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.08	SeedPlants
AMTR_s00166p00060690	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.04	SeedPlants
GSVIVT01007596001	No alias	RNA processing.organelle machineries.RNA...	0.15	SeedPlants
GSVIVT01032361001	No alias	RNA processing.organelle machineries.RNA...	0.21	SeedPlants
Gb_00173	No alias	RNA editing factor (CP31)	0.01	SeedPlants
LOC_Os08g44290.1	No alias	RNA editing factor (CP31)	0.07	SeedPlants
LOC_Os09g39180.1	No alias	RNA editing factor (CP31)	0.16	SeedPlants
MA_474396g0010	No alias	RNA editing factor (CP31)	0.06	SeedPlants
Solyc03g111840.3.1	No alias	RNA editing factor (CP31)	0.32	SeedPlants
Zm00001e003947_P001	No alias	RNA editing factor (CP31)	0.09	SeedPlants
Zm00001e022086_P002	No alias	RNA editing factor (CP31)	0.24	SeedPlants
Zm00001e033465_P001	No alias	RNA editing factor (CP31)	0.23	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0002376	immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IDA	Interproscan
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0003723	RNA binding	TAS	Interproscan
MF	GO:0003727	single-stranded RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	None	Extended
BP	GO:0006396	RNA processing	TAS	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006820	anion transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008187	poly-pyrimidine tract binding	None	Extended
MF	GO:0008266	poly(U) RNA binding	IDA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009072	aromatic amino acid family metabolic process	None	Extended
BP	GO:0009073	aromatic amino acid family biosynthetic process	RCA	Interproscan
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	None	Extended
BP	GO:0009451	RNA modification	IMP	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
CC	GO:0009579	thylakoid	IDA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009631	cold acclimation	IMP	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0009895	negative regulation of catabolic process	None	Extended
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009965	leaf morphogenesis	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	posttranscriptional regulation of gene expression	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016226	iron-sulfur cluster assembly	RCA	Interproscan
BP	GO:0016553	base conversion or substitution editing	IMP	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030154	cell differentiation	RCA	Interproscan
BP	GO:0031163	metallo-sulfur cluster assembly	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031329	regulation of cellular catabolic process	None	Extended
BP	GO:0031330	negative regulation of cellular catabolic process	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0042886	amide transport	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043487	regulation of RNA stability	None	Extended
BP	GO:0043489	RNA stabilization	IMP	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045036	protein targeting to chloroplast	RCA	Interproscan
BP	GO:0045087	innate immune response	IDA	Interproscan
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0045893	positive regulation of transcription, DNA-templated	RCA	Interproscan
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051707	response to other organism	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072596	establishment of protein localization to chloroplast	None	Extended
BP	GO:0072598	protein localization to chloroplast	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1902369	negative regulation of RNA catabolic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	246	316
IPR000504	RRM_dom	152	221

External Links

No external refs found!

AT4G24770 (ATRBP31, CP31, ATRBP33, RBP31)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation