AT4G24770 (ATRBP31, CP31, ATRBP33, RBP31)


Aliases : ATRBP31, CP31, ATRBP33, RBP31

Description : 31-kDa RNA binding protein


Gene families : OG_01_0000043 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000043_tree ,
OG_02_0000810 (LandPlants) Phylogenetic Tree(s): OG_02_0000810_tree ,
OG_03_0003594 (SeedPlants) Phylogenetic Tree(s): OG_03_0003594_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G24770
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00202090 evm_27.TU.AmTr_v1... RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.06 Archaeplastida
AMTR_s00061p00032260 evm_27.TU.AmTr_v1... RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.09 Archaeplastida
AMTR_s00061p00142700 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.07 Archaeplastida
AMTR_s00148p00072380 evm_27.TU.AmTr_v1... 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.04 Archaeplastida
AMTR_s00166p00060690 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AT4G13850 GRP2, ATGRP2, GR-RBP2 glycine-rich RNA-binding protein 2 0.03 Archaeplastida
Cpa|evm.model.tig00000944.16 No alias RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre09.g392350 No alias Glycine-rich RNA-binding protein 2, mitochondrial... 0.01 Archaeplastida
GSVIVT01007596001 No alias RNA processing.organelle machineries.RNA... 0.15 Archaeplastida
GSVIVT01025697001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.17 Archaeplastida
GSVIVT01027917001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.19 Archaeplastida
GSVIVT01030490001 No alias Glycine-rich RNA-binding protein 4, mitochondrial... 0.01 Archaeplastida
GSVIVT01032361001 No alias RNA processing.organelle machineries.RNA... 0.22 Archaeplastida
Gb_00173 No alias RNA editing factor (CP31) 0.01 Archaeplastida
Gb_05747 No alias component psPSRP2 of small ribosomal subunit proteome 0.04 Archaeplastida
Gb_09687 No alias Organelle RRM domain-containing protein 6, chloroplastic... 0.08 Archaeplastida
Gb_29798 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.09 Archaeplastida
Gb_32176 No alias component psPSRP2 of small ribosomal subunit proteome 0.04 Archaeplastida
Gb_37522 No alias Organelle RRM domain-containing protein 1, chloroplastic... 0.08 Archaeplastida
Gb_39591 No alias Organelle RRM domain-containing protein 6, chloroplastic... 0.04 Archaeplastida
LOC_Os02g57010.1 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.1 Archaeplastida
LOC_Os03g25960.1 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.2 Archaeplastida
LOC_Os07g06450.1 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.12 Archaeplastida
LOC_Os08g44290.1 No alias RNA editing factor (CP31) 0.07 Archaeplastida
LOC_Os09g39180.1 No alias RNA editing factor (CP31) 0.17 Archaeplastida
MA_10434075g0010 No alias component psPSRP2 of small ribosomal subunit proteome 0.02 Archaeplastida
MA_320479g0010 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.1 Archaeplastida
MA_367032g0010 No alias no hits & (original description: none) 0.1 Archaeplastida
MA_474396g0010 No alias RNA editing factor (CP31) 0.07 Archaeplastida
MA_7844926g0010 No alias Organelle RRM domain-containing protein 1, chloroplastic... 0.03 Archaeplastida
Mp2g13800.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.3 Archaeplastida
Mp3g24820.1 No alias RNA-binding protein CP31B, chloroplastic OS=Arabidopsis... 0.04 Archaeplastida
Mp8g03420.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.04 Archaeplastida
Pp3c12_9890V3.1 No alias chloroplast RNA-binding protein 29 0.09 Archaeplastida
Pp3c8_16740V3.1 No alias chloroplast RNA-binding protein 29 0.09 Archaeplastida
Solyc01g006940.4.1 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.23 Archaeplastida
Solyc03g111840.3.1 No alias RNA editing factor (CP31) 0.31 Archaeplastida
Solyc09g007850.3.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.08 Archaeplastida
Solyc09g090960.4.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.12 Archaeplastida
Solyc10g086150.2.1 No alias 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.13 Archaeplastida
Zm00001e001824_P002 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e003947_P001 No alias RNA editing factor (CP31) 0.09 Archaeplastida
Zm00001e010844_P001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 Archaeplastida
Zm00001e016211_P001 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.04 Archaeplastida
Zm00001e022086_P002 No alias RNA editing factor (CP31) 0.24 Archaeplastida
Zm00001e032835_P001 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.23 Archaeplastida
Zm00001e033465_P001 No alias RNA editing factor (CP31) 0.23 Archaeplastida
Zm00001e035630_P001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.05 Archaeplastida
AMTR_s00061p00142700 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.08 LandPlants
AMTR_s00148p00072380 evm_27.TU.AmTr_v1... 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.03 LandPlants
AMTR_s00166p00060690 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 LandPlants
GSVIVT01007596001 No alias RNA processing.organelle machineries.RNA... 0.15 LandPlants
GSVIVT01025697001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.16 LandPlants
GSVIVT01027917001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.19 LandPlants
GSVIVT01032361001 No alias RNA processing.organelle machineries.RNA... 0.22 LandPlants
Gb_00173 No alias RNA editing factor (CP31) 0.01 LandPlants
Gb_29798 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.08 LandPlants
Gb_32176 No alias component psPSRP2 of small ribosomal subunit proteome 0.04 LandPlants
LOC_Os02g57010.1 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.11 LandPlants
LOC_Os03g25960.1 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.2 LandPlants
LOC_Os08g44290.1 No alias RNA editing factor (CP31) 0.07 LandPlants
LOC_Os09g39180.1 No alias RNA editing factor (CP31) 0.18 LandPlants
MA_185349g0010 No alias 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.02 LandPlants
MA_320479g0010 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.09 LandPlants
MA_474396g0010 No alias RNA editing factor (CP31) 0.06 LandPlants
Mp2g13800.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.29 LandPlants
Mp3g24820.1 No alias RNA-binding protein CP31B, chloroplastic OS=Arabidopsis... 0.04 LandPlants
Mp8g03420.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.04 LandPlants
Pp3c12_9890V3.1 No alias chloroplast RNA-binding protein 29 0.08 LandPlants
Solyc03g111840.3.1 No alias RNA editing factor (CP31) 0.32 LandPlants
Solyc09g007850.3.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.08 LandPlants
Solyc09g090960.4.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.13 LandPlants
Solyc10g086150.2.1 No alias 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.13 LandPlants
Zm00001e001824_P002 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.05 LandPlants
Zm00001e003947_P001 No alias RNA editing factor (CP31) 0.09 LandPlants
Zm00001e010844_P001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.02 LandPlants
Zm00001e016211_P001 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.04 LandPlants
Zm00001e022086_P002 No alias RNA editing factor (CP31) 0.24 LandPlants
Zm00001e033465_P001 No alias RNA editing factor (CP31) 0.23 LandPlants
Zm00001e035630_P001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.05 LandPlants
AMTR_s00061p00142700 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.08 SeedPlants
AMTR_s00166p00060690 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 SeedPlants
GSVIVT01007596001 No alias RNA processing.organelle machineries.RNA... 0.15 SeedPlants
GSVIVT01032361001 No alias RNA processing.organelle machineries.RNA... 0.21 SeedPlants
Gb_00173 No alias RNA editing factor (CP31) 0.01 SeedPlants
LOC_Os08g44290.1 No alias RNA editing factor (CP31) 0.07 SeedPlants
LOC_Os09g39180.1 No alias RNA editing factor (CP31) 0.16 SeedPlants
MA_474396g0010 No alias RNA editing factor (CP31) 0.06 SeedPlants
Solyc03g111840.3.1 No alias RNA editing factor (CP31) 0.32 SeedPlants
Zm00001e003947_P001 No alias RNA editing factor (CP31) 0.09 SeedPlants
Zm00001e022086_P002 No alias RNA editing factor (CP31) 0.24 SeedPlants
Zm00001e033465_P001 No alias RNA editing factor (CP31) 0.23 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IDA Interproscan
MF GO:0003723 RNA binding ISS Interproscan
MF GO:0003723 RNA binding TAS Interproscan
BP GO:0006396 RNA processing TAS Interproscan
MF GO:0008266 poly(U) RNA binding IDA Interproscan
BP GO:0009073 aromatic amino acid family biosynthetic process RCA Interproscan
BP GO:0009451 RNA modification IMP Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009535 chloroplast thylakoid membrane IDA Interproscan
CC GO:0009570 chloroplast stroma IDA Interproscan
CC GO:0009579 thylakoid IDA Interproscan
BP GO:0009631 cold acclimation IMP Interproscan
CC GO:0009941 chloroplast envelope IDA Interproscan
BP GO:0009965 leaf morphogenesis RCA Interproscan
BP GO:0016226 iron-sulfur cluster assembly RCA Interproscan
BP GO:0016553 base conversion or substitution editing IMP Interproscan
BP GO:0030154 cell differentiation RCA Interproscan
BP GO:0043489 RNA stabilization IMP Interproscan
BP GO:0045036 protein targeting to chloroplast RCA Interproscan
BP GO:0045087 innate immune response IDA Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 246 316
IPR000504 RRM_dom 152 221
No external refs found!