Smo167367 (PACid_15418583)


Aliases : PACid_15418583

Description : 27.3.67 RNA.regulation of transcription.putative transcription regulator NOP56-like protein homolog of nucleolar protein NOP56 (NOP56) LOCATED IN: nucleolus, cell wall EXPRESSED IN: 22 plant structures EXPRESSED DURING: 13 growth stages CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain (InterPro:IPR002687), NOP5, N-terminal (InterPro:IPR012974), NOSIC (InterPro:IPR012976) BEST Arabidopsis thaliana protein match is: NOP56-like pre RNA processing ribonucleoprotein (TAIR:AT3G12860.1) Has 24182 Blast hits to 12540 proteins in 912 species: Archae - 265 Bacteria - 1523 Metazoa - 8592 Fungi - 2628 Plants - 1300 Viruses - 179 Other Eukaryotes - 9695 (source: NCBI BLink). & (loc_os03g22880.1 : 625.0


Gene families : OG_01_0004523 (Gene family) Phylogenetic Tree(s): OG0004523_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo167367
Cluster HCCA cluster: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
AT1G56110 NOP56 homolog of nucleolar protein NOP56 0.08 Gene family
AT3G12860 No alias NOP56-like pre RNA processing ribonucleoprotein 0.02 Gene family
Cpa|evm.model.tig00001073.20 No alias 27.3.67 RNA.regulation of transcription.putative... 0.05 Gene family
Cre12.g525200 No alias 27.3.67 RNA.regulation of transcription.putative... 0.07 Gene family
GSVIVT01008506001 No alias 27.3.67 RNA.regulation of transcription.putative... 0.08 Gene family
LOC_Os03g22880 Os03g0352300 27.3.67 RNA.regulation of transcription.putative... 0.06 Gene family
Solyc01g100570.3.1 Solyc01g100570.3 27.3.67 RNA.regulation of transcription.putative... 0.08 Gene family
Zm00001d029174 GRMZM2G144995 27.3.67 RNA.regulation of transcription.putative... 0.06 Gene family
Zm00001d047472 GRMZM2G110233 29.2.2.3.1 protein.synthesis.ribosome... 0.08 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR012974 NOP5_N 13 78
No external refs found!