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  5. AMTR_s00012p00208260

AMTR_s00012p00208260 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00012.146

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor


Gene families : OG_01_0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0000288 (LandPlants) Phylogenetic Tree(s): OG_02_0000288_tree ,
OG_03_0003085 (SeedPlants) Phylogenetic Tree(s): OG_03_0003085_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00012p00208260
Cluster HCCA: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
AMTR_s01267p00006490 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
AT1G08810 MYB60, AtMYB60 myb domain protein 60 0.03 Archaeplastida
AT1G56160 ATMYB72, MYB72 myb domain protein 72 0.03 Archaeplastida
AT2G02820 MYB88, AtMYB88 myb domain protein 88 0.04 Archaeplastida
AT3G49690 MYB84, RAX3, ATMYB84 myb domain protein 84 0.02 Archaeplastida
Cre17.g714229 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01004464001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01011436001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01012447001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01019834001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01027493001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01027811001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01033648001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01037667001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
Gb_22883 No alias transcription factor (MYB) 0.03 Archaeplastida
Gb_24641 No alias transcription factor (MYB) 0.04 Archaeplastida
LOC_Os02g17190.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os03g20090.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os03g51110.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os08g33150.1 No alias transcription factor (MYB) 0.06 Archaeplastida
MA_14730g0020 No alias transcription factor (MYB) 0.04 Archaeplastida
MA_55123g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
Mp1g09420.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Pp3c13_8880V3.1 No alias myb domain protein 4r1 0.02 Archaeplastida
Pp3c2_250V3.1 No alias No annotation 0.05 Archaeplastida
Pp3c9_24170V3.1 No alias myb domain protein 33 0.07 Archaeplastida
Solyc01g079620.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc06g009710.4.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc07g053230.3.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc09g010820.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc12g005890.3.1 No alias Transcription factor MYB101 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e005507_P001 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e012156_P001 No alias No annotation 0.04 Archaeplastida
Zm00001e019501_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e020754_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e020963_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e029600_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e034807_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e035993_P001 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e040334_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e041239_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
GSVIVT01019834001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 LandPlants
LOC_Os01g63680.1 No alias transcription factor (MYB) 0.01 LandPlants
MA_605711g0010 No alias Transcription factor MYB3R-4 OS=Arabidopsis thaliana... 0.02 LandPlants
Solyc09g010820.3.1 No alias transcription factor (MYB) 0.03 LandPlants
GSVIVT01019834001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 SeedPlants
GSVIVT01027493001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.01 SeedPlants
MA_605711g0010 No alias Transcription factor MYB3R-4 OS=Arabidopsis thaliana... 0.02 SeedPlants
Solyc09g010820.3.1 No alias transcription factor (MYB) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001005 SANT/Myb 164 209
IPR001005 SANT/Myb 60 106
IPR001005 SANT/Myb 112 158
No external refs found!