AT4G21100 (DDB1B)

Aliases : DDB1B

Description : damaged DNA binding protein 1B

Gene families : OG_01_0003490 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003490_tree ,
OG_02_0005531 (LandPlants) Phylogenetic Tree(s): OG_02_0005531_tree ,
OG_03_0005427 (SeedPlants) Phylogenetic Tree(s): OG_03_0005427_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G21100
Cluster	HCCA: Cluster_260

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01021587001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.06	Archaeplastida
LOC_Os05g51480.1	No alias	component DDB1 of UV-damaged DNA-binding protein...	0.02	Archaeplastida
Solyc02g021650.3.1	No alias	component DDB1 of UV-damaged DNA-binding protein...	0.05	Archaeplastida
Zm00001e026665_P002	No alias	component DDB1 of UV-damaged DNA-binding protein...	0.03	Archaeplastida
Zm00001e032569_P002	No alias	component DDB1 of UV-damaged DNA-binding protein...	0.03	Archaeplastida
GSVIVT01021587001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.06	LandPlants
Gb_36569	No alias	component DDB1 of UV-damaged DNA-binding protein...	0.02	LandPlants
LOC_Os05g51480.1	No alias	component DDB1 of UV-damaged DNA-binding protein...	0.02	LandPlants
MA_41156g0010	No alias	component DDB1 of UV-damaged DNA-binding protein...	0.02	LandPlants
Solyc02g021650.3.1	No alias	component DDB1 of UV-damaged DNA-binding protein...	0.04	LandPlants
Zm00001e026665_P002	No alias	component DDB1 of UV-damaged DNA-binding protein...	0.02	LandPlants
Zm00001e032569_P002	No alias	component DDB1 of UV-damaged DNA-binding protein...	0.03	LandPlants
GSVIVT01021587001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	SeedPlants
Gb_36569	No alias	component DDB1 of UV-damaged DNA-binding protein...	0.02	SeedPlants
LOC_Os05g51480.1	No alias	component DDB1 of UV-damaged DNA-binding protein...	0.02	SeedPlants
MA_41156g0010	No alias	component DDB1 of UV-damaged DNA-binding protein...	0.02	SeedPlants
Solyc02g021650.3.1	No alias	component DDB1 of UV-damaged DNA-binding protein...	0.04	SeedPlants
Zm00001e026665_P002	No alias	component DDB1 of UV-damaged DNA-binding protein...	0.02	SeedPlants
Zm00001e032569_P002	No alias	component DDB1 of UV-damaged DNA-binding protein...	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003684	damaged DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007062	sister chromatid cohesion	RCA	Interproscan
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	IMP	Interproscan
BP	GO:0009880	embryonic pattern specification	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010014	meristem initiation	None	Extended
BP	GO:0010072	primary shoot apical meristem specification	RCA	Interproscan
BP	GO:0010099	regulation of photomorphogenesis	None	Extended
BP	GO:0010100	negative regulation of photomorphogenesis	RCA	Interproscan
BP	GO:0010162	seed dormancy process	RCA	Interproscan
BP	GO:0010431	seed maturation	RCA	Interproscan
BP	GO:0010564	regulation of cell cycle process	RCA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022611	dormancy process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045595	regulation of cell differentiation	RCA	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048366	leaf development	RCA	Interproscan
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048581	negative regulation of post-embryonic development	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048608	reproductive structure development	RCA	Interproscan
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048825	cotyledon development	RCA	Interproscan
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051241	negative regulation of multicellular organismal process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051301	cell division	RCA	Interproscan
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090421	embryonic meristem initiation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000030	regulation of response to red or far red light	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004871	Cleavage/polyA-sp_fac_asu_C	744	1057

External Links

No external refs found!

AT4G21100 (DDB1B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation