AT4G20440 (smB)


Aliases : smB

Description : small nuclear ribonucleoprotein associated protein B


Gene families : OG_01_0004360 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004360_tree ,
OG_02_0004546 (LandPlants) Phylogenetic Tree(s): OG_02_0004546_tree ,
OG_03_0006110 (SeedPlants) Phylogenetic Tree(s): OG_03_0006110_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G20440
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
MA_10426235g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.07 Archaeplastida
MA_10435493g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.05 Archaeplastida
Pp3c10_22940V3.1 No alias Small nuclear ribonucleoprotein family protein 0.05 Archaeplastida
Smo8958 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
Solyc01g094540.4.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.09 Archaeplastida
Solyc05g049950.3.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.11 Archaeplastida
GSVIVT01034611001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 LandPlants
MA_10426235g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.07 LandPlants
MA_10435493g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.05 LandPlants
Pp3c10_22940V3.1 No alias Small nuclear ribonucleoprotein family protein 0.05 LandPlants
Pp3c3_24910V3.1 No alias Small nuclear ribonucleoprotein family protein 0.02 LandPlants
Smo8958 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 LandPlants
Solyc01g094540.4.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.09 LandPlants
Solyc05g049950.3.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.11 LandPlants
AMTR_s00004p00109230 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 SeedPlants
GSVIVT01034611001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 SeedPlants
MA_10426235g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.07 SeedPlants
MA_10435493g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.05 SeedPlants
Solyc01g094540.4.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.09 SeedPlants
Solyc05g049950.3.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.1 SeedPlants

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome TAS Interproscan
BP GO:0001510 RNA methylation RCA Interproscan
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005654 nucleoplasm IDA Interproscan
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex ISS Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0015030 Cajal body IDA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 9 83
No external refs found!