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  5. Len_g39172

Len_g39172


Description : not classified & original description: none


Gene families : OG0000596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000596_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g39172

Target Alias Description ECC score Gene Family Method Actions
AT1G63630 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g015683 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g48359 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g25412 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g38128 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g38904 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g18028 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g19215 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g38980 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g38980 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01036253001 No alias Pentatricopeptide repeat-containing protein At1g12620... 0.05 OrthoFinder output from all 47 species
Len_g07355 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g24294 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g36891 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g25858 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430317g0040 No alias Pentatricopeptide repeat-containing protein At4g11690... 0.03 OrthoFinder output from all 47 species
MA_33956g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.04 OrthoFinder output from all 47 species
MA_7256709g0010 No alias Pentatricopeptide repeat-containing protein At1g05670,... 0.05 OrthoFinder output from all 47 species
Msp_g11830 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g25561 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 27 73
IPR002885 Pentatricopeptide_repeat 112 159
No external refs found!