Smo161430 (PACid_15401681)


Aliases : PACid_15401681

Description : 30.11 signalling.light Red/far-red photoreceptor involved in the regulation of de-etiolation. Exists in two inter-convertible forms: Pr and Pfr (active). Involved in the light-promotion of seed germination and in the shade avoidance response. phytochrome B (PHYB) CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Phytochrome chromophore binding site (InterPro:IPR013516), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), GAF (InterPro:IPR003018) BEST Arabidopsis thaliana protein match is: phytochrome D (TAIR:AT4G16250.1) Has 25059 Blast hits to 24774 proteins in 3701 species: Archae - 266 Bacteria - 19279 Metazoa - 9 Fungi - 493 Plants - 3930 Viruses - 5 Other Eukaryotes - 1077 (source: NCBI BLink). & (chl4|514352 : 84.0


Gene families : OG_01_0000639 (Gene family) Phylogenetic Tree(s): OG0000639_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo161430
Cluster HCCA cluster: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AT1G09570 FHY2, HY8, PHYA, FRE1 phytochrome A 0.03 Gene family
Solyc10g044670.2.1 Solyc10g044670.2 No description available 0.02 Gene family
Zm00001d033799 GRMZM2G157727 30.11 signalling.light Light-labile cytoplasmic... 0.04 Gene family
Zm00001d050162 No alias 30.11 signalling.light Light-labile cytoplasmic... 0.02 Gene family

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013767 PAS_fold 628 743
No external refs found!