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  5. Len_g38387

Len_g38387 (HTB4)


Aliases : HTB4

Description : histone *(H2B) & original description: none


Gene families : OG0000176 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000176_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g38387
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Adi_g004775 HTB4 histone *(H2B) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g019244 No alias histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g021198 No alias histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g031895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g27849 HTB4 histone *(H2B) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g37348 No alias histone *(H2B) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g30446 HTB4 histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22937 HTB4 histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z015600.1 Ceric.1Z015600 histone *(H2B) & original description: pacid=50604576... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000944.18 No alias Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
Dac_g01811 HTB4 histone *(H2B) & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g22090 HTB4 histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g06996 HTB4 histone *(H2B) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g22923 HTB4 histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
MA_38565g0010 No alias histone (H2B) 0.03 OrthoFinder output from all 47 species
Msp_g08532 No alias histone *(H2B) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g39704 No alias histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c17_15750V3.1 HTB4, Pp3c17_15750 Histone superfamily protein 0.01 OrthoFinder output from all 47 species
Pp3c4_20250V3.1 HTB4, Pp3c4_20250 Histone superfamily protein 0.02 OrthoFinder output from all 47 species
Ppi_g42537 No alias histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g055440.1.1 HTB11, Solyc05g055440 histone (H2B) 0.02 OrthoFinder output from all 47 species
Spa_g13989 No alias histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g32990 HTB4 histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g46015 HTB4 histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g52508 No alias histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e039057_P002 HTB11, Zm00001e039057 histone (H2B) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0007088 regulation of mitotic nuclear division IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0010965 regulation of mitotic sister chromatid separation IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033045 regulation of sister chromatid segregation IEP HCCA
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0051783 regulation of nuclear division IEP HCCA
BP GO:0051983 regulation of chromosome segregation IEP HCCA
BP GO:0090231 regulation of spindle checkpoint IEP HCCA
BP GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901976 regulation of cell cycle checkpoint IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
BP GO:1903504 regulation of mitotic spindle checkpoint IEP HCCA
BP GO:1905818 regulation of chromosome separation IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 12 88
No external refs found!